LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
CTC-459F4.3
hsa-miR-214-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1857-1883
0.049
0
7mer
707-725
0.016
0
6mer
1463-1489
0.009
0
6mer
1096-1108
0.005
0
6mer
750-767
0.005
0
CTA-796E4.5
hsa-miR-214-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31319-31337
0.014
0
7mer
1836-1846
0.007
3
7mer
10236-10261
0.007
3
7mer
20803-20816
0.005
3
6mer
31599-31611
0.005
2
8mer
5030-5057
0.005
2
7mer
17508-17530
0.005
Not Conserved
7mer
6605-6630
0.004
5
6mer
31411-31427
0.004
1
7mer
6930-6956
0.003
2
6mer
10880-10895
0.003
5
7mer
20478-20503
0.003
0
6mer
30401-30419
0.002
Not Conserved
6mer
27313-27331
0.002
0
6mer
4956-4980
0.001
3
6mer
4250-4274
0.001
1
6mer
13649-13673
0.001
1
6mer
8535-8543
0.001
1
6mer
5671-5690
0.001
0
6mer
5409-5427
0.001
0
6mer
18157-18177
0.001
Not Conserved
6mer
11191-11217
0.001
1
6mer
13042-13060
0.001
0
6mer
20836-20853
0.001
2
6mer
13067-13090
0.001
3
6mer
10951-10972
0.001
2
HOXA11-AS
hsa-miR-214-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000520395
Biotype: antisense
Gene id: ENSG00000240990
Gene Name: HOXA11-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1124-1144
0.080
2
7mer
595-613
0.003
0
XLOC_011369
hsa-miR-214-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023538
Biotype: transcript isomorph
Gene id: XLOC_011369
Gene Name: XLOC_011369
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-255
0.083
10
XIST
hsa-miR-214-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18747-18772
0.020
3
9mer
4930-4951
0.008
1
7mer
6917-6940
0.006
4
6mer
132-145
0.006
1
7mer
13685-13708
0.006
0
8mer
15734-15758
0.004
1
6mer
19243-19258
0.004
2
6mer
3429-3434
0.004
4
7mer
14786-14805
0.004
1
6mer
18443-18457
0.004
0
6mer
2344-2359
0.002
1
6mer
9942-9957
0.002
3
6mer
9355-9381
0.002
0
6mer
16549-16560
0.002
2
6mer
7068-7089
0.002
3
6mer
1529-1550
0.001
2
6mer
15308-15329
0.001
0
6mer
9705-9726
0.001
1
6mer
15755-15777
0.001
0
6mer
17845-17866
0.001
0
RP11-46H11.3
hsa-miR-214-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2756-2782
0.030
0
6mer
103-129
0.018
0
6mer
551-569
0.013
0
6mer
2615-2637
0.010
0
6mer
2338-2354
0.009
0
XLOC_013779
hsa-miR-214-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028429
Biotype: transcript isomorph
Gene id: XLOC_013779
Gene Name: XLOC_013779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3047-3070
0.012
1
7mer
2885-2900
0.010
1
7mer
229-244
0.009
Not Conserved
7mer
653-676
0.005
Not Conserved
7mer
736-751
0.005
Not Conserved
6mer
332-344
0.005
0
7mer
494-508
0.005
Not Conserved
7mer
205-231
0.004
Not Conserved
6mer
955-979
0.004
1
7mer
1109-1121
0.003
Not Conserved
7mer
844-867
0.003
Not Conserved
6mer
952-959
0.003
1
6mer
1215-1226
0.003
0
6mer
2834-2851
0.002
0
7mer
1162-1187
0.002
Not Conserved
6mer
2736-2747
0.002
Not Conserved
6mer
603-622
0.001
Not Conserved
6mer
1680-1701
0.001
Not Conserved
MIR6818
hsa-miR-214-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41826-41841
0.007
10
8mer
38514-38520
0.007
0
7mer
43729-43749
0.005
6
6mer
46740-46764
0.004
13
7mer
23570-23592
0.004
1
7mer
39931-39951
0.003
0
6mer
3727-3742
0.003
8
7mer
45413-45432
0.003
3
6mer
1063-1069
0.003
1
7mer
35202-35218
0.003
3
7mer
38606-38622
0.003
0
6mer
832-841
0.003
1
6mer
37781-37789
0.003
5
6mer
4167-4188
0.003
2
6mer
7623-7649
0.002
5
6mer
25957-25978
0.002
5
6mer
44901-44909
0.002
2
6mer
48013-48025
0.002
6
6mer
45671-45695
0.002
1
7mer
41012-41029
0.002
0
6mer
8977-8981
0.002
3
6mer
46175-46199
0.002
4
6mer
25384-25396
0.001
5
6mer
35615-35639
0.001
0
6mer
36120-36144
0.001
0
6mer
7043-7064
0.001
1
6mer
45508-45522
0.001
0
6mer
40379-40401
0.001
1
6mer
41723-41748
0.001
5
6mer
25944-25961
0.001
4
6mer
31646-31668
0.001
0
6mer
45649-45674
0.001
3
6mer
25941-25960
0.000
2
6mer
46154-46177
0.000
4
LINC00663
hsa-miR-214-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590092
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-279
0.065
1
6mer
594-619
0.007
0
6mer
591-607
0.003
0
6mer
859-885
0.002
Not Conserved
CTD-2013N24.2
hsa-miR-214-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601735
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-220
0.053
11
6mer
132-155
0.010
11
7mer
342-366
0.008
1
6mer
133-158
0.005
7
AC003973.4
hsa-miR-214-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1184-1199
0.055
0
7mer
557-575
0.020
0
RP11-539I5.1
hsa-miR-214-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000453491
Biotype: antisense
Gene id: ENSG00000225302
Gene Name: RP11-539I5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4824-4849
0.064
8
8mer
4016-4037
0.007
1
6mer
1009-1029
0.002
1
6mer
650-676
0.002
2
6mer
2693-2711
0.001
1
LL22NC03-86G7.1
hsa-miR-214-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19278-19283
0.008
2
7mer
37090-37114
0.006
Not Conserved
8mer
20-43
0.005
2
8mer
24388-24412
0.005
8
7mer
23929-23953
0.005
1
7mer
421-445
0.004
2
7mer
6048-6067
0.003
5
7mer
32179-32204
0.003
2
8mer
361-381
0.003
0
7mer
790-807
0.002
2
6mer
361-374
0.002
1
6mer
774-792
0.002
1
6mer
31403-31418
0.002
1
6mer
1093-1117
0.002
1
6mer
26844-26864
0.001
4
6mer
35222-35239
0.001
2
6mer
11086-11113
0.001
1
6mer
36056-36064
0.001
1
7mer
15059-15078
0.001
0
6mer
20710-20734
0.001
1
6mer
2769-2781
0.001
1
6mer
34433-34453
0.001
1
6mer
32005-32031
0.001
1
6mer
21895-21911
0.001
1
6mer
18402-18423
0.001
1
6mer
6888-6894
0.001
1
7mer
4317-4340
0.001
0
6mer
24670-24687
0.001
1
6mer
11322-11338
0.001
Not Conserved
6mer
9704-9730
0.001
1
6mer
33132-33153
0.001
2
6mer
33919-33934
0.001
Not Conserved
6mer
13047-13068
0.001
Not Conserved
6mer
17855-17873
0.001
0
6mer
26650-26674
0.001
1
6mer
6937-6959
0.001
0
6mer
33988-34013
0.001
1
6mer
2851-2874
0.001
2
6mer
13148-13170
0.000
3
6mer
2856-2877
0.000
2
RP11-759A24.3
hsa-miR-214-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619812
Biotype: lincRNA
Gene id: ENSG00000275443
Gene Name: RP11-759A24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-267
0.074
10
LINC01410
hsa-miR-214-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2165-2175
0.026
0
6mer
1907-1927
0.011
0
6mer
2283-2307
0.010
0
6mer
2215-2230
0.010
0
6mer
2209-2227
0.007
0
6mer
2165-2178
0.006
0
6mer
2423-2442
0.004
Not Conserved
LINC00662
hsa-miR-214-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586954
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2045-2064
0.015
0
7mer
1043-1061
0.013
0
6mer
403-421
0.013
0
6mer
1635-1653
0.013
0
6mer
384-405
0.009
0
6mer
381-405
0.009
0
6mer
378-398
0.002
Not Conserved
KB-68A7.2
hsa-miR-214-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000622854
Biotype: lincRNA
Gene id: ENSG00000277352
Gene Name: KB-68A7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-226
0.065
1
6mer
302-315
0.008
1
RP1-302G2.5
hsa-miR-214-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000573382
Biotype: lincRNA
Gene id: ENSG00000262179
Gene Name: RP1-302G2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-105
0.029
6
7mer
76-94
0.010
5
7mer
136-150
0.010
6
6mer
91-108
0.008
9
7mer
194-214
0.007
2
6mer
59-78
0.005
4
8mer
97-115
0.004
2
AP000688.29
hsa-miR-214-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422473
Biotype: lincRNA
Gene id: ENSG00000233393
Gene Name: AP000688.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1907-1923
0.029
0
7mer
354-376
0.019
0
6mer
211-236
0.014
0
6mer
1533-1550
0.010
0
RP1-302G2.5
hsa-miR-214-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000576476
Biotype: lincRNA
Gene id: ENSG00000262179
Gene Name: RP1-302G2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-108
0.029
6
7mer
79-97
0.010
5
7mer
139-153
0.010
6
7mer
197-217
0.007
2
6mer
94-111
0.007
9
6mer
62-81
0.006
4
8mer
100-118
0.004
2
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