LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
LINC00421
hsa-miR-214-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
734-760
0.023
0
6mer
561-578
0.008
0
6mer
596-619
0.007
0
6mer
478-498
0.001
Not Conserved
XLOC_006520
hsa-miR-214-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014352
Biotype: transcript isomorph
Gene id: XLOC_006520
Gene Name: XLOC_006520
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
495-512
0.039
1
RP4-761J14.8
hsa-miR-214-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000589924
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
429-454
0.006
9
6mer
516-536
0.004
5
6mer
516-533
0.004
5
6mer
525-545
0.004
0
6mer
508-530
0.004
3
6mer
508-527
0.004
3
6mer
508-524
0.004
1
6mer
508-521
0.003
0
6mer
522-542
0.003
1
6mer
519-539
0.003
1
XLOC_009016
hsa-miR-214-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019181
Biotype: transcript isomorph
Gene id: XLOC_009016
Gene Name: XLOC_009016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
740-767
0.015
1
8mer
134-161
0.012
0
6mer
469-487
0.009
1
6mer
1115-1137
0.003
Not Conserved
LARS2-AS1
hsa-miR-214-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000442534
Biotype: antisense
Gene id: ENSG00000232455
Gene Name: LARS2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-369
0.014
2
7mer
462-467
0.013
3
8mer
440-464
0.011
1
AC130689.5
hsa-miR-214-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000413674
Biotype: sense_intronic
Gene id: ENSG00000236457
Gene Name: AC130689.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-156
0.022
12
7mer
285-307
0.009
6
8mer
223-248
0.008
4
AL035610.1
hsa-miR-214-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000426534
Biotype: lincRNA
Gene id: ENSG00000232079
Gene Name: AL035610.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-48
0.018
1
6mer
1546-1559
0.009
2
7mer
570-575
0.009
0
6mer
1075-1079
0.004
0
PCBP1-AS1
hsa-miR-214-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000600002
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-294
0.037
3
8mer+mismatch
700-721
0.002
1
C21orf90
hsa-miR-214-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000354333
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1073-1097
0.008
1
7mer
2225-2242
0.008
0
7mer
1851-1876
0.007
1
7mer
508-535
0.006
1
6mer
2253-2274
0.004
0
6mer
1414-1431
0.004
1
6mer
1695-1709
0.002
1
6mer
529-550
0.001
0
ZNF341-AS1
hsa-miR-214-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000423074
Biotype: antisense
Gene id: ENSG00000230753
Gene Name: ZNF341-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-294
0.034
1
7mer
143-160
0.005
1
RP5-1057I20.2
hsa-miR-214-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550684
Biotype: lincRNA
Gene id: ENSG00000257488
Gene Name: RP5-1057I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-330
0.033
0
6mer
122-146
0.006
2
RP11-554D14.6
hsa-miR-214-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551629
Biotype: lincRNA
Gene id: ENSG00000257398
Gene Name: RP11-554D14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-298
0.022
0
6mer
328-352
0.016
0
XLOC_013995
hsa-miR-214-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3299-3315
0.006
0
6mer
3735-3747
0.004
0
8mer
3203-3219
0.003
Not Conserved
6mer
3495-3499
0.003
0
6mer
3016-3020
0.003
0
6mer
3684-3699
0.003
0
6mer
3447-3459
0.002
0
6mer
3492-3499
0.002
0
7mer
3638-3651
0.002
Not Conserved
6mer
3399-3411
0.002
0
6mer
2872-2884
0.001
Not Conserved
7mer
2436-2452
0.001
0
6mer
2533-2548
0.001
0
6mer
2677-2684
0.001
0
6mer
3013-3020
0.001
0
6mer
2776-2793
0.001
0
6mer
2440-2452
0.001
0
7mer
2868-2876
0.001
Not Conserved
XLOC_007383
hsa-miR-214-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015999
Biotype: transcript isomorph
Gene id: XLOC_007383
Gene Name: XLOC_007383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-308
0.010
Not Conserved
8mer
51-68
0.009
Not Conserved
8mer
388-404
0.005
Not Conserved
6mer
196-211
0.003
Not Conserved
6mer
1208-1212
0.002
Not Conserved
6mer
581-588
0.002
Not Conserved
6mer
1101-1116
0.002
Not Conserved
6mer
415-441
0.002
Not Conserved
6mer
1149-1164
0.002
Not Conserved
6mer
422-444
0.002
Not Conserved
RP11-560A15.4
hsa-miR-214-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000442780
Biotype: lincRNA
Gene id: ENSG00000231078
Gene Name: RP11-560A15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
335-356
0.039
1
AC018359.1
hsa-miR-214-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424786
Biotype: lincRNA
Gene id: ENSG00000226320
Gene Name: AC018359.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-340
0.034
3
6mer
692-714
0.005
1
PCBP1-AS1
hsa-miR-214-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597318
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
471-493
0.034
3
6mer
195-221
0.004
1
PCBP1-AS1
hsa-miR-214-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609543
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-249
0.038
3
XLOC_006864
hsa-miR-214-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014789
Biotype: transcript isomorph
Gene id: XLOC_006864
Gene Name: XLOC_006864
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-301
0.033
3
6mer
112-116
0.006
2
AC139099.5
hsa-miR-214-3p
0.845
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574098
Biotype: lincRNA
Gene id: ENSG00000262094
Gene Name: AC139099.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1492-1517
0.016
0
8mer
432-450
0.013
1
7mer
405-425
0.010
0
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