LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP4-555D20.2
hsa-miR-214-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568686
Biotype: lincRNA
Gene id: ENSG00000261786
Gene Name: RP4-555D20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
632-649
0.008
4
7mer
4481-4506
0.007
2
7mer
2293-2318
0.004
0
7mer
3450-3469
0.004
1
6mer
4747-4760
0.004
0
6mer
4448-4463
0.003
1
7mer
88-104
0.003
0
6mer
450-475
0.003
3
6mer
3059-3065
0.002
0
6mer
1741-1758
0.002
1
6mer
3455-3472
0.000
1
RP11-286H14.8
hsa-miR-214-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000466717
Biotype: antisense
Gene id: ENSG00000243230
Gene Name: RP11-286H14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
457-480
0.040
6
RP11-264B17.3
hsa-miR-214-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569969
Biotype: retained_intron
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2047-2070
0.005
7
7mer
3578-3598
0.004
6
7mer
953-967
0.004
8
6mer
439-460
0.004
6
6mer
5166-5190
0.003
1
6mer
5065-5090
0.003
1
8mer
2328-2348
0.003
1
7mer
2120-2135
0.002
9
6mer
939-963
0.002
2
7mer
1421-1446
0.002
4
7mer
1373-1397
0.002
4
6mer
2098-2124
0.001
8
6mer
4424-4438
0.001
1
6mer
5118-5138
0.001
1
6mer
1693-1714
0.001
0
6mer
3578-3601
0.001
5
XLOC_013448
hsa-miR-214-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028098
Biotype: transcript isomorph
Gene id: XLOC_013448
Gene Name: XLOC_013448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-196
0.016
1
7mer
330-346
0.011
1
6mer
796-821
0.005
0
6mer
756-779
0.004
1
6mer
692-710
0.004
0
RP4-769N13.6
hsa-miR-214-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000466616
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-258
0.023
1
7mer
240-262
0.010
1
7mer
325-342
0.007
2
RP11-219B17.1
hsa-miR-214-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559203
Biotype: antisense
Gene id: ENSG00000245534
Gene Name: RP11-219B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-81
0.040
1
C1RL-AS1
hsa-miR-214-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000382215
Biotype: antisense
Gene id: ENSG00000205885
Gene Name: C1RL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1600-1619
0.020
2
7mer
332-354
0.006
0
6mer
351-376
0.003
0
6mer
351-373
0.002
1
6mer
348-361
0.002
1
6mer
349-370
0.002
1
6mer
348-367
0.002
1
6mer
348-364
0.002
1
XLOC_009868
hsa-miR-214-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020555
Biotype: transcript isomorph
Gene id: XLOC_009868
Gene Name: XLOC_009868
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2084-2104
0.036
5
9mer
1274-1301
0.003
1
RP11-627G23.1
hsa-miR-214-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532886
Biotype: retained_intron
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1730-1753
0.010
5
8mer
3159-3179
0.009
1
6mer
4317-4328
0.005
0
6mer
4031-4049
0.003
1
7mer
709-729
0.002
0
6mer
4092-4108
0.002
0
7mer
3286-3295
0.002
0
6mer
3641-3666
0.002
0
6mer
734-757
0.002
1
7mer
2214-2238
0.001
1
6mer
1925-1942
0.001
1
XLOC_009473
hsa-miR-214-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019665
Biotype: transcript isomorph
Gene id: XLOC_009473
Gene Name: XLOC_009473
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1066-1091
0.035
5
6mer
720-740
0.004
0
CTD-3148I10.15
hsa-miR-214-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595815
Biotype: processed_transcript
Gene id: ENSG00000273189
Gene Name: CTD-3148I10.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-121
0.009
Not Conserved
7mer
745-763
0.006
1
6mer
620-643
0.005
7
6mer
106-124
0.005
3
7mer
644-664
0.004
4
6mer
114-127
0.004
3
6mer
627-646
0.003
5
6mer
114-130
0.002
1
6mer
644-667
0.002
6
XLOC_004256
hsa-miR-214-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009843
Biotype: transcript isomorph
Gene id: XLOC_004256
Gene Name: XLOC_004256
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-146
0.020
0
7mer
1967-1988
0.006
1
7mer
1331-1352
0.004
0
6mer
5272-5297
0.004
0
6mer
5893-5911
0.002
Not Conserved
6mer
3622-3637
0.001
0
6mer
1601-1620
0.001
0
6mer
1080-1100
0.001
0
6mer
4483-4498
0.001
0
XLOC_008212
hsa-miR-214-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017364
Biotype: transcript isomorph
Gene id: XLOC_008212
Gene Name: XLOC_008212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
950-969
0.036
3
6mer
1149-1168
0.004
0
XLOC_012103
hsa-miR-214-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025299
Biotype: transcript isomorph
Gene id: XLOC_012103
Gene Name: XLOC_012103
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-319
0.040
3
RP11-95G17.2
hsa-miR-214-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606756
Biotype: sense_intronic
Gene id: ENSG00000272472
Gene Name: RP11-95G17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-69
0.033
Not Conserved
6mer
815-834
0.004
0
6mer
558-581
0.003
1
XLOC_010290
hsa-miR-214-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
734-760
0.023
0
6mer
561-578
0.008
0
6mer
596-619
0.007
0
6mer
478-498
0.001
Not Conserved
XLOC_001223
hsa-miR-214-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001838
Biotype: transcript isomorph
Gene id: XLOC_001223
Gene Name: XLOC_001223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-136
0.027
1
6mer
656-675
0.012
1
XLOC_013093
hsa-miR-214-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027051
Biotype: transcript isomorph
Gene id: XLOC_013093
Gene Name: XLOC_013093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2465-2489
0.016
1
7mer
1974-2000
0.014
1
7mer
1374-1390
0.010
1
LINC00652
hsa-miR-214-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000412553
Biotype: lincRNA
Gene id: ENSG00000179935
Gene Name: LINC00652
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2730-2746
0.016
3
8mer
2020-2039
0.007
1
6mer
2986-3006
0.007
3
6mer
190-207
0.004
1
6mer
1429-1455
0.002
1
6mer
2847-2870
0.002
1
RP11-285G1.2
hsa-miR-214-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436877
Biotype: antisense
Gene id: ENSG00000234504
Gene Name: RP11-285G1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1324-1350
0.013
1
6mer
4-18
0.006
0
7mer
490-514
0.006
1
6mer
1168-1186
0.004
1
6mer
569-587
0.004
1
6mer
1094-1117
0.003
3
6mer
447-465
0.002
2
6mer
487-495
0.002
1
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