LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-219J21.2
hsa-miR-214-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522524
Biotype: lincRNA
Gene id: ENSG00000253342
Gene Name: RP11-219J21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-112
0.041
0
RP11-398K22.12
hsa-miR-214-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421315
Biotype: antisense
Gene id: ENSG00000229852
Gene Name: RP11-398K22.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2629-2648
0.010
2
7mer
3091-3104
0.008
0
7mer
450-471
0.007
Not Conserved
7mer
2851-2870
0.006
0
6mer
2683-2704
0.003
1
6mer
2593-2611
0.002
1
6mer
409-419
0.002
Not Conserved
6mer
2684-2707
0.001
0
6mer
2689-2710
0.001
0
6mer
1007-1028
0.001
Not Conserved
FENDRR
hsa-miR-214-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_036444.1
Biotype: lincRNA
Gene id: NR_036444.1 (gene)
Gene Name: FENDRR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1298-1324
0.010
0
7mer
175-199
0.010
0
7mer
2147-2173
0.009
0
7mer
1065-1077
0.005
0
7mer
1930-1957
0.002
Not Conserved
6mer
551-576
0.002
0
7mer
1536-1547
0.002
0
FENDRR
hsa-miR-214-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000599749
Biotype: lincRNA
Gene id: ENSG00000268388
Gene Name: FENDRR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1224-1250
0.011
0
7mer
101-125
0.010
0
7mer
2073-2099
0.007
0
7mer
991-1003
0.006
0
6mer
477-502
0.002
0
7mer
1856-1883
0.002
Not Conserved
7mer
1462-1473
0.001
0
XLOC_004797
hsa-miR-214-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010311
Biotype: transcript isomorph
Gene id: XLOC_004797
Gene Name: XLOC_004797
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-286
0.031
1
6mer
361-383
0.005
2
7mer
583-604
0.005
1
RP11-218M11.3
hsa-miR-214-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579378
Biotype: lincRNA
Gene id: ENSG00000263860
Gene Name: RP11-218M11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-79
0.037
0
6mer
4-15
0.004
Not Conserved
RP11-55K13.1
hsa-miR-214-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570148
Biotype: antisense
Gene id: ENSG00000260495
Gene Name: RP11-55K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-170
0.021
0
6mer
2204-2224
0.008
4
7mer
1164-1178
0.006
1
6mer
584-599
0.004
3
7mer
1160-1178
0.001
1
6mer
1103-1129
0.001
2
6mer
1155-1178
0.001
1
SEPT5-GP1BB
hsa-miR-214-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037611.1
Biotype: sense
Gene id: NR_037611.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3764-3784
0.006
2
7mer
4604-4621
0.005
1
8mer
4109-4126
0.005
4
6mer
4223-4243
0.004
7
6mer
1998-2011
0.003
11
7mer
1544-1566
0.003
8
8mer
1001-1017
0.003
0
7mer
4238-4256
0.003
4
6mer
4238-4252
0.002
3
6mer
3947-3964
0.002
6
6mer
4204-4228
0.002
4
6mer
4190-4213
0.002
3
6mer
4160-4182
0.001
3
6mer
3773-3787
0.001
1
AC008984.2
hsa-miR-214-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616950
Biotype: processed_transcript
Gene id: ENSG00000275210
Gene Name: AC008984.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1448-1467
0.023
3
8mer
1637-1662
0.018
2
C14orf64
hsa-miR-214-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556462
Biotype: lincRNA
Gene id: ENSG00000246223
Gene Name: C14orf64
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1839-1853
0.019
1
7mer
333-350
0.016
1
6mer
900-925
0.003
1
6mer
1254-1278
0.002
0
RP11-61I13.3
hsa-miR-214-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607215
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2928-2950
0.027
9
7mer
2201-2226
0.006
2
6mer
2569-2594
0.004
3
6mer
1191-1215
0.001
2
6mer
2198-2213
0.001
2
6mer
1734-1742
0.001
Not Conserved
CTD-3064H18.4
hsa-miR-214-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000316807
Biotype: antisense
Gene id: ENSG00000180458
Gene Name: CTD-3064H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2583-2601
0.015
0
7mer
2894-2916
0.008
1
7mer
2309-2336
0.007
1
6mer
2313-2336
0.006
2
6mer
2015-2037
0.003
1
6mer
2450-2473
0.002
Not Conserved
RP11-23J9.4
hsa-miR-214-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000375206
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-296
0.009
7
7mer
263-279
0.006
5
9mer
2659-2684
0.004
1
6mer
5712-5736
0.003
3
6mer
5115-5128
0.003
7
7mer
4912-4936
0.003
3
6mer
1050-1072
0.003
7
7mer
2274-2299
0.002
4
7mer
2059-2080
0.002
0
7mer
4852-4877
0.002
1
7mer
2408-2431
0.002
1
6mer
2719-2743
0.001
7
RP11-309L24.4
hsa-miR-214-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609480
Biotype: lincRNA
Gene id: ENSG00000272899
Gene Name: RP11-309L24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-128
0.028
7
7mer
408-432
0.008
1
6mer
1215-1223
0.002
6
7mer
1289-1301
0.001
3
7mer
1514-1532
0.001
1
AC139099.5
hsa-miR-214-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570366
Biotype: lincRNA
Gene id: ENSG00000262094
Gene Name: AC139099.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-123
0.023
1
7mer
78-98
0.017
0
RP3-467L1.4
hsa-miR-214-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451646
Biotype: antisense
Gene id: ENSG00000236266
Gene Name: RP3-467L1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-223
0.023
6
6mer
249-270
0.008
7
7mer
688-709
0.005
3
6mer
692-709
0.004
3
LINC00665
hsa-miR-214-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590657
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1857-1874
0.016
0
6mer
282-301
0.008
0
6mer
2209-2230
0.006
0
7mer
1793-1813
0.005
0
6mer
1584-1607
0.004
0
6mer
2147-2171
0.001
Not Conserved
XLOC_007930
hsa-miR-214-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017140
Biotype: transcript isomorph
Gene id: XLOC_007930
Gene Name: XLOC_007930
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-201
0.023
0
8mer
1272-1294
0.017
0
RP1-168P16.1
hsa-miR-214-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567166
Biotype: sense_intronic
Gene id: ENSG00000261692
Gene Name: RP1-168P16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-171
0.025
2
7mer
5-25
0.009
1
6mer
143-159
0.006
1
RP1-269M15.3
hsa-miR-214-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611791
Biotype: lincRNA
Gene id: ENSG00000233508
Gene Name: RP1-269M15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1761-1787
0.038
9
6mer
2118-2134
0.002
1
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