LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
LINC01529
hsa-miR-214-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000433059
Biotype: lincRNA
Gene id: ENSG00000225872
Gene Name: LINC01529
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-209
0.013
3
7mer
361-376
0.007
4
8mer
1222-1248
0.005
3
6mer
264-287
0.004
1
6mer
1398-1423
0.003
4
7mer
1247-1269
0.002
2
6mer
291-305
0.002
2
9mer
1441-1463
0.002
0
6mer
614-638
0.002
2
6mer
1710-1720
0.001
Not Conserved
6mer
1580-1597
0.001
0
RP11-29G8.3
hsa-miR-214-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000563635
Biotype: processed_transcript
Gene id: ENSG00000261553
Gene Name: RP11-29G8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3710-3722
0.017
0
7mer
2098-2123
0.012
5
7mer
744-770
0.006
1
8mer
3275-3298
0.002
1
6mer
3323-3337
0.002
6
6mer
2181-2201
0.002
3
6mer
2304-2326
0.002
3
LINC00364
hsa-miR-214-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000415120
Biotype: lincRNA
Gene id: ENSG00000230040
Gene Name: LINC00364
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
253-268
0.021
1
7mer
562-583
0.020
1
XLOC_010257
hsa-miR-214-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020992
Biotype: transcript isomorph
Gene id: XLOC_010257
Gene Name: XLOC_010257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1140-1163
0.033
3
7mer
658-678
0.008
1
XLOC_011918
hsa-miR-214-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024630
Biotype: transcript isomorph
Gene id: XLOC_011918
Gene Name: XLOC_011918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3736-3761
0.028
0
7mer
666-682
0.005
0
6mer
197-222
0.005
0
7mer
1381-1397
0.002
Not Conserved
XLOC_008164
hsa-miR-214-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017321
Biotype: transcript isomorph
Gene id: XLOC_008164
Gene Name: XLOC_008164
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1395-1422
0.032
2
8mer
937-957
0.009
1
NAMA
hsa-miR-214-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_102271.1
Biotype: lincRNA
Gene id: NR_102271.1 (gene)
Gene Name: NAMA
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1352-1371
0.016
10
9mer
491-500
0.014
2
7mer
71-88
0.007
1
7mer
781-797
0.003
1
LINC00426
hsa-miR-214-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000420219
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
984-1007
0.015
1
7mer
839-857
0.010
3
6mer
920-946
0.005
2
6mer
723-745
0.004
1
6mer
976-989
0.004
1
6mer
893-916
0.003
1
XLOC_005575
hsa-miR-214-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012041
Biotype: transcript isomorph
Gene id: XLOC_005575
Gene Name: XLOC_005575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1235-1249
0.017
1
7mer
1741-1757
0.012
0
6mer
128-138
0.006
1
6mer
1719-1743
0.004
2
6mer
1101-1105
0.002
0
AC026904.1
hsa-miR-214-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000430626
Biotype: lincRNA
Gene id: ENSG00000233858
Gene Name: AC026904.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
729-739
0.015
2
7mer
3034-3053
0.006
1
7mer
1459-1474
0.005
3
7mer
783-800
0.003
1
6mer
357-369
0.003
2
7mer
438-459
0.003
Not Conserved
6mer
3232-3258
0.003
1
6mer
2000-2017
0.001
1
6mer
1713-1736
0.001
0
6mer
2638-2654
0.001
Not Conserved
LINC00843
hsa-miR-214-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444438
Biotype: lincRNA
Gene id: ENSG00000178440
Gene Name: LINC00843
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-516
0.031
0
7mer
196-218
0.010
0
RP11-1223D19.1
hsa-miR-214-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000562665
Biotype: lincRNA
Gene id: ENSG00000261760
Gene Name: RP11-1223D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-143
0.041
1
DTX2P1-UPK3BP1-PMS2P11
hsa-miR-214-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584900
Biotype: processed_transcript
Gene id: ENSG00000265479
Gene Name: DTX2P1-UPK3BP1-PMS2P11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1610-1631
0.030
0
8mer
603-619
0.009
4
6mer
787-803
0.002
0
RP5-1057I20.2
hsa-miR-214-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546523
Biotype: lincRNA
Gene id: ENSG00000257488
Gene Name: RP5-1057I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-307
0.036
0
6mer
99-123
0.005
2
U91328.19
hsa-miR-214-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606723
Biotype: lincRNA
Gene id: ENSG00000272462
Gene Name: U91328.19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3727-3747
0.019
3
7mer
4010-4029
0.011
0
7mer
2294-2307
0.004
0
6mer
2769-2773
0.002
1
6mer
1485-1502
0.002
2
6mer
1684-1699
0.001
0
6mer
1527-1543
0.001
0
6mer
1721-1746
0.000
0
CTC-527H23.3
hsa-miR-214-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561876
Biotype: lincRNA
Gene id: ENSG00000260052
Gene Name: CTC-527H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
458-481
0.028
0
7mer
341-363
0.013
1
XLOC_010952
hsa-miR-214-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022654
Biotype: transcript isomorph
Gene id: XLOC_010952
Gene Name: XLOC_010952
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2103-2124
0.023
1
7mer
1384-1405
0.005
1
7mer
900-915
0.004
0
8mer
1569-1595
0.004
1
6mer
2214-2238
0.003
1
6mer
1443-1467
0.001
Not Conserved
6mer
1483-1507
0.000
0
RP11-730N24.1
hsa-miR-214-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504339
Biotype: lincRNA
Gene id: ENSG00000248908
Gene Name: RP11-730N24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-145
0.035
2
7mer
1451-1459
0.006
1
XLOC_001751
hsa-miR-214-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003048
Biotype: transcript isomorph
Gene id: XLOC_001751
Gene Name: XLOC_001751
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1127-1150
0.024
1
7mer
511-537
0.017
1
RP11-299J3.8
hsa-miR-214-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608756
Biotype: antisense
Gene id: ENSG00000272758
Gene Name: RP11-299J3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
965-984
0.016
9
6mer
929-949
0.013
14
6mer
929-952
0.011
13
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