LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-728F11.3
hsa-miR-214-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531850
Biotype: antisense
Gene id: ENSG00000254844
Gene Name: RP11-728F11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-487
0.038
2
6mer
47-67
0.005
1
ZBED5-AS1
hsa-miR-214-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530344
Biotype: antisense
Gene id: ENSG00000247271
Gene Name: ZBED5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-288
0.043
4
XLOC_008402
hsa-miR-214-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018127
Biotype: transcript isomorph
Gene id: XLOC_008402
Gene Name: XLOC_008402
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
622-645
0.022
2
8mer
164-180
0.016
1
6mer
164-183
0.005
4
RP11-305L7.6
hsa-miR-214-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439438
Biotype: lincRNA
Gene id: ENSG00000229694
Gene Name: RP11-305L7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-77
0.038
3
6mer
198-219
0.004
2
XLOC_000492
hsa-miR-214-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001219
Biotype: transcript isomorph
Gene id: XLOC_000492
Gene Name: XLOC_000492
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1695-1716
0.042
7
RP13-1039J1.2
hsa-miR-214-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000489211
Biotype: lincRNA
Gene id: ENSG00000184115
Gene Name: RP13-1039J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
672-689
0.042
1
XLOC_001625
hsa-miR-214-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002978
Biotype: transcript isomorph
Gene id: XLOC_001625
Gene Name: XLOC_001625
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-370
0.012
2
7mer
1676-1700
0.008
0
7mer
1898-1910
0.006
1
6mer
2305-2322
0.004
1
6mer
263-278
0.004
1
6mer
1002-1026
0.003
1
6mer
328-355
0.003
0
6mer
1761-1774
0.002
1
RP11-15H20.7
hsa-miR-214-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594653
Biotype: lincRNA
Gene id: ENSG00000269107
Gene Name: RP11-15H20.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-558
0.028
1
6mer
129-153
0.014
1
MUC19
hsa-miR-214-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24146-24162
0.022
7
8mer
18399-18419
0.006
0
6mer
738-758
0.002
2
6mer
1087-1106
0.002
1
6mer
12090-12103
0.001
Not Conserved
6mer
5557-5578
0.001
0
6mer
5952-5968
0.001
1
6mer
16848-16865
0.001
0
6mer
11549-11566
0.001
0
6mer
1925-1946
0.001
2
6mer
5705-5722
0.001
2
6mer
17448-17465
0.001
Not Conserved
6mer
17958-17972
0.001
Not Conserved
AC022007.5
hsa-miR-214-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437616
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-209
0.019
0
6mer
192-216
0.012
0
6mer
253-271
0.008
0
7mer
323-348
0.002
Not Conserved
6mer
495-517
0.001
Not Conserved
RP11-525G13.2
hsa-miR-214-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455257
Biotype: antisense
Gene id: ENSG00000236364
Gene Name: RP11-525G13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-45
0.042
2
RP11-216M21.7
hsa-miR-214-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
613-626
0.021
0
6mer
2119-2143
0.010
0
6mer
1886-1903
0.005
0
6mer
2076-2099
0.005
0
RP4-769N13.6
hsa-miR-214-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000475738
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-258
0.023
1
7mer
240-262
0.010
1
7mer
325-342
0.008
2
AC074183.4
hsa-miR-214-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439105
Biotype: lincRNA
Gene id: ENSG00000232019
Gene Name: AC074183.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
557-580
0.021
0
6mer
233-249
0.012
0
6mer
657-679
0.008
0
XLOC_002054
hsa-miR-214-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004212
Biotype: transcript isomorph
Gene id: XLOC_002054
Gene Name: XLOC_002054
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1713-1736
0.034
0
6mer
663-688
0.003
0
6mer
1673-1690
0.002
2
6mer
1094-1106
0.002
1
XLOC_005208
hsa-miR-214-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011743
Biotype: transcript isomorph
Gene id: XLOC_005208
Gene Name: XLOC_005208
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3996-4016
0.017
3
7mer
4279-4298
0.010
0
7mer
2563-2576
0.004
0
6mer
249-257
0.003
0
6mer
1754-1771
0.002
2
6mer
3038-3042
0.002
1
6mer
1953-1968
0.001
0
6mer
1796-1812
0.001
0
6mer
1990-2015
0.000
0
KB-1572G7.2
hsa-miR-214-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000421064
Biotype: processed_transcript
Gene id: ENSG00000273000
Gene Name: KB-1572G7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
456-482
0.014
1
7mer
2689-2709
0.007
0
6mer
6-10
0.006
0
6mer
2906-2924
0.005
2
7mer
2945-2968
0.004
0
7mer
2552-2577
0.002
Not Conserved
6mer
910-930
0.002
1
6mer
1332-1354
0.002
1
RP4-769N13.6
hsa-miR-214-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000476910
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
229-247
0.023
1
7mer
229-251
0.010
1
7mer
427-444
0.008
2
XLOC_003474
hsa-miR-214-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008010
Biotype: transcript isomorph
Gene id: XLOC_003474
Gene Name: XLOC_003474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-148
0.042
7
SNHG3
hsa-miR-214-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413987
Biotype: retained_intron
Gene id: ENSG00000242125
Gene Name: SNHG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2133-2158
0.032
0
7mer
435-457
0.010
Not Conserved
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