LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-710F7.3
hsa-miR-214-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513220
Biotype: antisense
Gene id: ENSG00000249635
Gene Name: RP11-710F7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3440-3463
0.038
1
8mer
1363-1377
0.005
1
6mer
2186-2196
0.001
0
RP3-399L15.1
hsa-miR-214-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000446358
Biotype: lincRNA
Gene id: ENSG00000232395
Gene Name: RP3-399L15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-61
0.030
3
6mer
465-479
0.007
3
6mer
718-734
0.007
1
AC106875.1
hsa-miR-214-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435175
Biotype: sense_intronic
Gene id: ENSG00000228496
Gene Name: AC106875.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-220
0.035
1
6mer
411-426
0.004
1
6mer
716-732
0.004
1
XLOC_004709
hsa-miR-214-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010247
Biotype: transcript isomorph
Gene id: XLOC_004709
Gene Name: XLOC_004709
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-353
0.032
1
7mer
135-156
0.011
1
CTD-2256P15.5
hsa-miR-214-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607847
Biotype: lincRNA
Gene id: ENSG00000271715
Gene Name: CTD-2256P15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-413
0.033
0
6mer
162-182
0.006
0
6mer
120-146
0.005
1
RP3-471C18.1
hsa-miR-214-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445568
Biotype: lincRNA
Gene id: ENSG00000227116
Gene Name: RP3-471C18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
443-459
0.043
5
TINCR
hsa-miR-214-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000448587
Biotype: lincRNA
Gene id: ENSG00000223573
Gene Name: TINCR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-194
0.010
2
7mer
3161-3181
0.008
1
6mer
416-435
0.006
3
6mer
44-69
0.006
1
6mer
3382-3407
0.004
3
6mer
3547-3567
0.003
2
7mer
3074-3090
0.003
1
7mer
1941-1961
0.003
0
7mer
1774-1800
0.002
Not Conserved
MEF2C-AS1
hsa-miR-214-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506665
Biotype: antisense
Gene id: ENSG00000248309
Gene Name: MEF2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-46
0.043
12
LINC00445
hsa-miR-214-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456848
Biotype: lincRNA
Gene id: ENSG00000236036
Gene Name: LINC00445
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-227
0.043
2
AL035610.2
hsa-miR-214-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000437194
Biotype: lincRNA
Gene id: ENSG00000236532
Gene Name: AL035610.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-67
0.034
2
8mer
293-314
0.009
0
SNHG14
hsa-miR-214-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549804
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
685-709
0.010
0
7mer
7640-7661
0.010
1
9mer
265-291
0.009
1
8mer
404-429
0.007
1
6mer
5926-5948
0.004
5
6mer
2780-2797
0.002
0
6mer
6852-6872
0.002
1
KIAA1875
hsa-miR-214-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_024207.1
Biotype: sense
Gene id: NR_024207.1 (gene)
Gene Name: KIAA1875
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6223-6248
0.005
1
6mer
6795-6813
0.004
0
8mer
1909-1932
0.004
4
9mer
559-577
0.003
0
7mer
3856-3878
0.003
4
6mer
4137-4163
0.003
6
6mer
435-459
0.002
3
7mer
605-629
0.002
1
6mer
2102-2117
0.002
9
7mer
1926-1949
0.002
4
6mer
1410-1434
0.002
5
8mer
2840-2864
0.002
1
6mer
4643-4664
0.001
2
6mer
632-657
0.001
1
6mer
3237-3260
0.001
3
6mer
3617-3643
0.001
1
6mer
1201-1222
0.001
4
6mer
1422-1437
0.001
5
6mer
6242-6268
0.001
0
6mer
3912-3935
0.001
5
6mer
2930-2947
0.000
Not Conserved
6mer
1475-1500
0.000
4
6mer
2154-2179
0.000
0
FLJ26245
hsa-miR-214-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562769
Biotype: lincRNA
Gene id: ENSG00000261122
Gene Name: FLJ26245
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-365
0.043
0
XLOC_012904
hsa-miR-214-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026588
Biotype: transcript isomorph
Gene id: XLOC_012904
Gene Name: XLOC_012904
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-254
0.032
0
7mer
645-668
0.005
Not Conserved
6mer
622-640
0.003
0
6mer
625-649
0.003
0
XLOC_013484
hsa-miR-214-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028125
Biotype: transcript isomorph
Gene id: XLOC_013484
Gene Name: XLOC_013484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-188
0.043
6
ABHD14A-ACY1
hsa-miR-214-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037192.1
Biotype: sense
Gene id: NR_037192.1 (gene)
Gene Name: ABHD14A-ACY1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1703-1709
0.016
5
8mer
1542-1560
0.011
1
7mer
202-223
0.006
6
7mer
609-628
0.005
3
6mer
1622-1640
0.003
4
6mer
114-135
0.003
4
ATXN8OS
hsa-miR-214-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000414504
Biotype: antisense
Gene id: ENSG00000230223
Gene Name: ATXN8OS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
137-150
0.005
6
6mer
1090-1107
0.004
Not Conserved
6mer
1096-1110
0.004
Not Conserved
6mer
1099-1113
0.003
Not Conserved
6mer
1102-1125
0.003
Not Conserved
6mer
1102-1116
0.003
Not Conserved
6mer
1123-1143
0.003
Not Conserved
6mer
1120-1140
0.002
Not Conserved
6mer
1114-1134
0.002
Not Conserved
6mer
1111-1131
0.002
Not Conserved
6mer
1102-1122
0.002
Not Conserved
6mer
1102-1128
0.002
Not Conserved
6mer
1102-1119
0.002
Not Conserved
6mer
1117-1137
0.002
Not Conserved
6mer
1126-1146
0.002
Not Conserved
CTD-2297D10.2
hsa-miR-214-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512155
Biotype: antisense
Gene id: ENSG00000250579
Gene Name: CTD-2297D10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-144
0.021
0
9mer
702-726
0.009
0
7mer
418-430
0.009
0
6mer
624-629
0.003
0
6mer
415-430
0.002
0
AC068039.4
hsa-miR-214-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1690-1703
0.015
0
6mer
1371-1384
0.010
0
6mer
1492-1512
0.007
0
6mer
1448-1463
0.006
0
6mer
338-343
0.004
Not Conserved
XLOC_012630
hsa-miR-214-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026287
Biotype: transcript isomorph
Gene id: XLOC_012630
Gene Name: XLOC_012630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
898-920
0.032
0
6mer
2003-2024
0.006
0
6mer
1227-1250
0.005
0
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