LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-23J9.4
hsa-miR-214-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000532526
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-97
0.011
7
7mer
4162-4186
0.008
3
7mer
64-80
0.007
5
9mer
2020-2045
0.004
1
6mer
4962-4986
0.004
3
6mer
4365-4378
0.004
7
7mer
1635-1660
0.002
4
7mer
1416-1441
0.002
0
6mer
2080-2104
0.002
7
7mer
1769-1792
0.002
1
RP11-114G22.1
hsa-miR-214-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000590328
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
727-743
0.033
4
6mer
820-835
0.007
4
6mer
24-44
0.004
0
LINC01128
hsa-miR-214-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624927
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
640-666
0.033
1
7mer
230-250
0.012
1
LINC00665
hsa-miR-214-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590622
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
629-653
0.040
1
6mer
1252-1268
0.004
0
RP11-883G14.1
hsa-miR-214-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570245
Biotype: lincRNA
Gene id: ENSG00000261241
Gene Name: RP11-883G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
774-794
0.015
Not Conserved
7mer
77-100
0.010
1
8mer
483-507
0.010
1
6mer
740-766
0.006
2
6mer
498-510
0.003
3
AC106875.1
hsa-miR-214-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455754
Biotype: sense_intronic
Gene id: ENSG00000228496
Gene Name: AC106875.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-114
0.035
1
6mer
305-320
0.004
1
6mer
610-626
0.004
1
XLOC_013012
hsa-miR-214-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026954
Biotype: transcript isomorph
Gene id: XLOC_013012
Gene Name: XLOC_013012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-34
0.031
0
7mer
945-964
0.013
0
LINC00652
hsa-miR-214-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_026884.1
Biotype: lincRNA
Gene id: NR_026884.1 (gene)
Gene Name: LINC00652
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-133
0.018
1
8mer
824-840
0.017
3
6mer
1080-1100
0.007
3
6mer
941-964
0.002
1
XX-C2158C6.1
hsa-miR-214-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426839
Biotype: lincRNA
Gene id: ENSG00000230423
Gene Name: XX-C2158C6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-255
0.034
1
6mer
307-326
0.010
1
CTC-360G5.9
hsa-miR-214-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599320
Biotype: lincRNA
Gene id: ENSG00000269486
Gene Name: CTC-360G5.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-123
0.044
1
XLOC_003463
hsa-miR-214-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007999
Biotype: transcript isomorph
Gene id: XLOC_003463
Gene Name: XLOC_003463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-190
0.033
4
8mer
1033-1055
0.011
0
GSN-AS1
hsa-miR-214-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000414544
Biotype: antisense
Gene id: ENSG00000235865
Gene Name: GSN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-466
0.017
3
7mer
530-552
0.011
3
7mer
4239-4252
0.006
1
6mer
4578-4595
0.003
3
6mer
4147-4165
0.002
1
7mer
4072-4087
0.002
0
6mer
527-552
0.002
2
XLOC_011117
hsa-miR-214-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022385
Biotype: transcript isomorph
Gene id: XLOC_011117
Gene Name: XLOC_011117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5237-5251
0.018
1
7mer
1368-1385
0.008
1
7mer
3990-4015
0.008
2
6mer
5676-5691
0.004
4
6mer
4869-4888
0.002
3
6mer
1935-1960
0.002
1
6mer
2289-2313
0.001
0
6mer
905-929
0.001
0
RP11-576I22.2
hsa-miR-214-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416416
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-150
0.032
6
6mer
440-461
0.007
4
6mer
1623-1649
0.005
5
ZBED3-AS1
hsa-miR-214-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513591
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-106
0.025
1
6mer
1525-1549
0.008
1
7mer
609-631
0.006
1
7mer
1432-1442
0.005
1
AC013271.3
hsa-miR-214-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424113
Biotype: lincRNA
Gene id: ENSG00000186148
Gene Name: AC013271.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-116
0.044
1
AC022007.5
hsa-miR-214-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000454232
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-173
0.020
0
6mer
156-180
0.012
0
6mer
217-235
0.008
0
7mer
287-312
0.002
Not Conserved
6mer
493-515
0.001
Not Conserved
HNF1A-AS1
hsa-miR-214-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537361
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-342
0.013
1
6mer
421-435
0.010
6
7mer
353-369
0.007
1
6mer
467-487
0.005
3
6mer
512-536
0.004
3
6mer
357-376
0.004
1
FAM95A
hsa-miR-214-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_038409.1
Biotype: lincRNA
Gene id: NR_038409.1 (gene)
Gene Name: FAM95A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2365-2386
0.011
Not Conserved
7mer
374-387
0.010
0
7mer
2315-2337
0.009
Not Conserved
6mer
14-37
0.007
0
6mer
371-387
0.003
0
6mer
2032-2057
0.002
Not Conserved
6mer
2013-2034
0.001
Not Conserved
XLOC_013861
hsa-miR-214-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028968
Biotype: transcript isomorph
Gene id: XLOC_013861
Gene Name: XLOC_013861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-122
0.031
0
6mer
332-353
0.010
0
6mer
16-36
0.003
Not Conserved
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