LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
MROH7-TTC4
hsa-miR-214-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037640.1
Biotype: sense
Gene id: NR_037640.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6314-6330
0.007
2
6mer
6246-6254
0.005
1
7mer
3579-3593
0.004
6
7mer
2394-2417
0.004
5
7mer
6125-6152
0.004
0
6mer
3365-3387
0.003
9
7mer
1986-1998
0.003
4
6mer
246-259
0.003
0
6mer
239-256
0.002
0
6mer
5455-5460
0.002
0
6mer
3713-3731
0.002
5
6mer
4368-4383
0.002
5
7mer
2608-2627
0.001
4
6mer
5219-5238
0.001
1
6mer
5253-5276
0.001
1
6mer
1658-1670
0.001
1
6mer
2143-2159
0.001
4
6mer
2412-2420
0.001
4
RP11-23J9.4
hsa-miR-214-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000357054
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-97
0.011
7
7mer
64-80
0.007
5
9mer
2460-2485
0.004
1
7mer
4713-4737
0.004
3
6mer
5513-5537
0.004
3
6mer
4916-4929
0.004
7
6mer
851-873
0.003
7
7mer
2075-2100
0.002
4
7mer
1860-1881
0.002
0
7mer
4653-4678
0.002
1
6mer
2520-2544
0.002
7
7mer
2209-2232
0.002
1
MROH7-TTC4
hsa-miR-214-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037641.1
Biotype: sense
Gene id: NR_037641.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6093-6109
0.008
2
6mer
6025-6033
0.005
1
7mer
3595-3609
0.004
6
7mer
2410-2433
0.004
5
7mer
5904-5931
0.003
0
6mer
3381-3403
0.003
9
7mer
1986-1998
0.003
4
6mer
246-259
0.003
0
6mer
239-256
0.002
0
6mer
5234-5239
0.002
0
6mer
4252-4267
0.002
5
7mer
2624-2643
0.001
4
6mer
3729-3747
0.001
5
6mer
4998-5017
0.001
1
6mer
5032-5055
0.001
1
6mer
1658-1670
0.001
1
6mer
2159-2175
0.001
4
6mer
2428-2436
0.001
4
FENDRR
hsa-miR-214-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000598996
Biotype: lincRNA
Gene id: ENSG00000268388
Gene Name: FENDRR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2635-2661
0.012
0
8mer
1255-1281
0.011
0
7mer
132-156
0.011
0
7mer
1022-1034
0.005
0
6mer
508-533
0.002
0
7mer
1887-1914
0.002
Not Conserved
7mer
1493-1504
0.002
0
SCGB1B2P
hsa-miR-214-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597830
Biotype: lincRNA
Gene id: ENSG00000268751
Gene Name: SCGB1B2P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-144
0.017
1
8mer
99-123
0.017
0
6mer
121-137
0.012
2
RP11-389G6.3
hsa-miR-214-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562191
Biotype: sense_overlapping
Gene id: ENSG00000261292
Gene Name: RP11-389G6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1828-1849
0.037
9
6mer
1809-1831
0.004
0
6mer
984-1004
0.004
3
CTC-459F4.3
hsa-miR-214-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585827
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-135
0.023
0
6mer
506-518
0.013
0
6mer
160-177
0.010
0
AP006216.5
hsa-miR-214-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457746
Biotype: antisense
Gene id: ENSG00000236267
Gene Name: AP006216.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-303
0.046
1
RP11-933H2.4
hsa-miR-214-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000511699
Biotype: retained_intron
Gene id: ENSG00000250608
Gene Name: RP11-933H2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-118
0.019
1
7mer
558-580
0.013
1
6mer
290-306
0.005
2
6mer
2024-2044
0.005
1
7mer
269-294
0.004
1
RP4-539M6.22
hsa-miR-214-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000607893
Biotype: lincRNA
Gene id: ENSG00000273428
Gene Name: RP4-539M6.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
398-423
0.007
1
7mer
377-402
0.005
0
7mer
232-255
0.005
0
6mer
569-595
0.005
2
7mer
133-150
0.004
0
7mer
358-381
0.004
Not Conserved
6mer
535-552
0.004
1
6mer
156-171
0.002
0
6mer
429-444
0.002
1
6mer
282-297
0.002
0
6mer
335-360
0.002
1
6mer
190-213
0.001
0
6mer
293-318
0.001
0
6mer
324-339
0.001
Not Conserved
TINCR
hsa-miR-214-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_027064.1
Biotype: lincRNA
Gene id: NR_027064.1 (gene)
Gene Name: TINCR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-194
0.010
2
7mer
3161-3181
0.008
1
6mer
416-435
0.007
3
6mer
44-69
0.006
1
6mer
3382-3407
0.004
3
6mer
3547-3567
0.003
2
7mer
3074-3090
0.003
1
7mer
1941-1961
0.003
0
7mer
1774-1800
0.002
Not Conserved
XLOC_002227
hsa-miR-214-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004353
Biotype: transcript isomorph
Gene id: XLOC_002227
Gene Name: XLOC_002227
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-33
0.041
0
6mer
2136-2163
0.004
1
NPHP3-ACAD11
hsa-miR-214-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7563-7580
0.013
7
7mer
7718-7733
0.011
0
6mer
3940-3944
0.005
9
6mer
7476-7491
0.004
8
6mer
630-645
0.003
1
6mer
7013-7032
0.003
7
6mer
6844-6860
0.003
5
6mer
7010-7032
0.002
5
6mer
2617-2644
0.001
1
XX-C2158C6.3
hsa-miR-214-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415530
Biotype: lincRNA
Gene id: ENSG00000225532
Gene Name: XX-C2158C6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-361
0.025
1
7mer
292-312
0.021
0
RP11-92B11.3
hsa-miR-214-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578710
Biotype: antisense
Gene id: ENSG00000264673
Gene Name: RP11-92B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-27
0.045
0
RP4-539M6.22
hsa-miR-214-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000366413
Biotype: pseudogene
Gene id: ENSG00000273428
Gene Name: RP4-539M6.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-421
0.007
1
7mer
375-400
0.005
0
7mer
232-255
0.005
0
6mer
567-593
0.005
2
7mer
133-150
0.004
0
6mer
533-550
0.004
1
7mer
358-379
0.004
Not Conserved
6mer
156-171
0.002
0
6mer
427-442
0.002
1
6mer
282-297
0.002
0
6mer
335-360
0.001
1
6mer
190-213
0.001
0
6mer
293-318
0.001
0
6mer
324-339
0.001
Not Conserved
MIR519A2
hsa-miR-214-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597619
Biotype: lincRNA
Gene id: ENSG00000269842
Gene Name: MIR519A2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-219
0.033
1
6mer
1923-1944
0.007
0
6mer
76-97
0.005
0
CTD-2014E2.6
hsa-miR-214-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567765
Biotype: lincRNA
Gene id: ENSG00000261475
Gene Name: CTD-2014E2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
517-538
0.031
0
6mer
453-469
0.014
1
LINC00864
hsa-miR-214-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429129
Biotype: lincRNA
Gene id: ENSG00000228055
Gene Name: LINC00864
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-97
0.045
0
RP11-708H21.4
hsa-miR-214-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575159
Biotype: lincRNA
Gene id: ENSG00000262973
Gene Name: RP11-708H21.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1288-1301
0.017
0
6mer
555-574
0.012
1
7mer
673-690
0.008
0
6mer
563-584
0.007
1
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