LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000625
hsa-miR-214-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000424
Biotype: transcript isomorph
Gene id: XLOC_000625
Gene Name: XLOC_000625
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3556-3580
0.031
4
8mer
193-212
0.010
1
7mer
1711-1725
0.006
2
MEF2C-AS1
hsa-miR-214-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514794
Biotype: antisense
Gene id: ENSG00000248309
Gene Name: MEF2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
97-112
0.034
12
6mer
519-537
0.013
10
CTD-2031P19.5
hsa-miR-214-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000576302
Biotype: antisense
Gene id: ENSG00000262211
Gene Name: CTD-2031P19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
718-737
0.019
12
7mer
334-361
0.017
5
6mer
180-202
0.007
4
6mer
270-290
0.004
3
XXbac-BPG254F23.7
hsa-miR-214-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458375
Biotype: lincRNA
Gene id: ENSG00000232080
Gene Name: XXbac-BPG254F23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-300
0.047
0
RP4-719C8.1
hsa-miR-214-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443055
Biotype: antisense
Gene id: ENSG00000238194
Gene Name: RP4-719C8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-81
0.019
1
8mer
75-95
0.014
1
7mer
46-66
0.007
0
7mer
342-365
0.006
0
LINC00176
hsa-miR-214-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000444463
Biotype: lincRNA
Gene id: ENSG00000196421
Gene Name: LINC00176
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3997-4014
0.017
10
8mer
3466-3484
0.008
1
7mer
3964-3985
0.006
3
7mer
3506-3529
0.003
6
6mer
123-144
0.003
0
7mer
1385-1406
0.002
2
7mer
2556-2570
0.002
1
8mer
1843-1855
0.002
1
6mer
139-158
0.002
1
6mer
3521-3538
0.001
4
LINC01216
hsa-miR-214-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515728
Biotype: sense_intronic
Gene id: ENSG00000250223
Gene Name: LINC01216
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
637-660
0.028
1
7mer
774-792
0.018
0
LINC00864
hsa-miR-214-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000447936
Biotype: lincRNA
Gene id: ENSG00000228055
Gene Name: LINC00864
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-58
0.046
0
MROH7-TTC4
hsa-miR-214-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037639.1
Biotype: sense
Gene id: NR_037639.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6447-6463
0.008
2
6mer
6379-6387
0.005
1
7mer
2590-2613
0.004
5
7mer
3775-3789
0.004
6
6mer
3561-3583
0.003
9
7mer
6258-6285
0.003
0
7mer
2166-2178
0.003
4
6mer
344-361
0.002
0
6mer
351-364
0.002
0
6mer
5588-5593
0.002
0
6mer
3909-3927
0.002
5
7mer
2804-2823
0.002
4
6mer
4501-4516
0.002
5
6mer
5352-5371
0.001
1
6mer
5386-5409
0.001
1
6mer
1838-1850
0.001
1
6mer
2339-2355
0.001
4
6mer
2608-2616
0.001
4
XLOC_009852
hsa-miR-214-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020538
Biotype: transcript isomorph
Gene id: XLOC_009852
Gene Name: XLOC_009852
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-36
0.046
1
XLOC_007039
hsa-miR-214-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014475
Biotype: transcript isomorph
Gene id: XLOC_007039
Gene Name: XLOC_007039
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1307-1326
0.023
1
7mer
295-319
0.014
3
7mer
38-59
0.005
1
8mer
706-723
0.005
0
HLA-F-AS1
hsa-miR-214-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458236
Biotype: processed_transcript
Gene id: ENSG00000214922
Gene Name: HLA-F-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2788-2801
0.022
0
6mer
2458-2462
0.010
1
6mer
2746-2770
0.005
0
6mer
2743-2765
0.004
0
6mer
2707-2732
0.003
0
6mer
1336-1353
0.003
0
LINC00589
hsa-miR-214-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_026765.1
Biotype: lincRNA
Gene id: NR_026765.1 (gene)
Gene Name: LINC00589
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1310-1329
0.023
1
7mer
298-322
0.014
3
7mer
41-62
0.005
1
8mer
709-726
0.005
0
FGF14-IT1
hsa-miR-214-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607251
Biotype: sense_intronic
Gene id: ENSG00000243319
Gene Name: FGF14-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-438
0.030
1
7mer
356-367
0.009
1
6mer
568-592
0.004
2
6mer
1847-1862
0.003
2
RP11-120E13.1
hsa-miR-214-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437334
Biotype: lincRNA
Gene id: ENSG00000226134
Gene Name: RP11-120E13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-463
0.019
2
7mer
664-683
0.014
3
7mer
420-435
0.006
1
6mer
559-582
0.004
0
6mer
291-316
0.003
2
LINC00589
hsa-miR-214-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000506121
Biotype: lincRNA
Gene id: ENSG00000251191
Gene Name: LINC00589
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1315-1334
0.023
1
7mer
303-327
0.014
3
7mer
46-67
0.005
1
8mer
714-731
0.005
0
XLOC_006933
hsa-miR-214-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014864
Biotype: transcript isomorph
Gene id: XLOC_006933
Gene Name: XLOC_006933
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3300-3324
0.016
0
7mer
1177-1196
0.007
1
7mer
2478-2502
0.006
1
6mer
362-374
0.005
2
7mer
914-935
0.004
1
7mer
611-622
0.004
1
6mer
787-810
0.002
1
6mer
871-892
0.001
1
6mer
808-833
0.001
1
RP4-769N13.6
hsa-miR-214-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000460026
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-126
0.025
1
7mer
108-130
0.013
1
7mer
193-210
0.009
2
LINC00665
hsa-miR-214-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000438368
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
594-618
0.041
1
6mer
1376-1392
0.005
0
LOC100506858
hsa-miR-214-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104616.1
Biotype: lincRNA
Gene id: NR_104616.1 (gene)
Gene Name: LOC100506858
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-385
0.034
1
7mer
167-188
0.012
1
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