LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-214-3p


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Gene
miRNA
Score
DIANA Links
RP11-338C15.5
hsa-miR-214-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427949
Biotype: antisense
Gene id: ENSG00000235862
Gene Name: RP11-338C15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1781-1800
0.010
2
7mer
874-890
0.008
5
7mer
1709-1728
0.006
1
7mer
1466-1487
0.005
1
7mer
2034-2051
0.004
2
6mer
133-158
0.003
1
6mer
374-394
0.003
3
6mer
1345-1367
0.003
1
6mer
1498-1515
0.002
1
6mer
386-401
0.002
0
7mer
1171-1194
0.001
1
6mer
1228-1253
0.001
1
6mer
1168-1193
0.001
1
6mer
1165-1182
0.001
1
XLOC_007341
hsa-miR-214-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015968
Biotype: transcript isomorph
Gene id: XLOC_007341
Gene Name: XLOC_007341
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
377-404
0.032
0
6mer
327-351
0.004
0
6mer
12-38
0.004
Not Conserved
6mer
74-92
0.002
Not Conserved
6mer
171-195
0.002
Not Conserved
6mer
123-141
0.002
Not Conserved
6mer
273-297
0.002
Not Conserved
RP4-761J14.8
hsa-miR-214-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000396799
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1279-1300
0.006
5
6mer
1171-1196
0.004
9
6mer
1273-1293
0.003
5
6mer
1270-1290
0.003
5
6mer
1276-1296
0.003
5
6mer
1258-1278
0.003
5
6mer
1258-1275
0.003
5
6mer
817-838
0.003
5
6mer
1250-1269
0.002
3
6mer
1250-1266
0.002
1
6mer
1250-1263
0.002
0
6mer
1250-1272
0.002
3
6mer
1264-1284
0.002
1
6mer
1386-1400
0.002
0
6mer
1261-1281
0.002
1
6mer
1267-1287
0.002
0
6mer
1368-1388
0.001
4
6mer
1386-1403
0.001
0
6mer
1374-1397
0.001
0
RP11-44F21.5
hsa-miR-214-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000561705
Biotype: lincRNA
Gene id: ENSG00000260265
Gene Name: RP11-44F21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-302
0.045
0
6mer
178-203
0.003
Not Conserved
RP5-1057B20.3
hsa-miR-214-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000615357
Biotype: lincRNA
Gene id: ENSG00000277550
Gene Name: RP5-1057B20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
761-767
0.028
1
6mer
58-64
0.011
1
6mer
243-262
0.009
0
RP11-23J9.4
hsa-miR-214-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000534123
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-97
0.011
7
7mer
64-80
0.007
5
7mer
5295-5319
0.005
3
9mer
2460-2485
0.004
1
6mer
6095-6119
0.004
3
6mer
5498-5511
0.004
7
6mer
851-873
0.003
7
7mer
2075-2100
0.002
4
7mer
5235-5260
0.002
1
7mer
1860-1881
0.002
0
6mer
2520-2544
0.002
7
7mer
2209-2232
0.002
1
6mer
5039-5057
0.001
0
RP11-9L18.3
hsa-miR-214-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451784
Biotype: sense_intronic
Gene id: ENSG00000230898
Gene Name: RP11-9L18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-310
0.048
3
RP4-719C8.1
hsa-miR-214-3p
0.907
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000451510
Biotype: antisense
Gene id: ENSG00000238194
Gene Name: RP4-719C8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-64
0.020
1
8mer
58-78
0.014
1
7mer
29-49
0.007
0
7mer
325-348
0.006
0
LINC00445
hsa-miR-214-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000422430
Biotype: lincRNA
Gene id: ENSG00000236036
Gene Name: LINC00445
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-215
0.048
2
XLOC_003546
hsa-miR-214-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007535
Biotype: transcript isomorph
Gene id: XLOC_003546
Gene Name: XLOC_003546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3088-3105
0.025
5
7mer
281-296
0.011
1
6mer
2863-2877
0.004
1
7mer
2358-2372
0.004
1
6mer
1486-1500
0.002
1
6mer
1103-1123
0.001
Not Conserved
RP5-1057I20.2
hsa-miR-214-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550720
Biotype: lincRNA
Gene id: ENSG00000257488
Gene Name: RP5-1057I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
520-533
0.040
0
6mer
325-349
0.005
2
6mer
154-179
0.003
0
XLOC_008350
hsa-miR-214-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018086
Biotype: transcript isomorph
Gene id: XLOC_008350
Gene Name: XLOC_008350
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-214
0.042
2
6mer
141-157
0.005
0
CTD-2560K21.6
hsa-miR-214-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596350
Biotype: sense_intronic
Gene id: ENSG00000268231
Gene Name: CTD-2560K21.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-531
0.047
0
RP11-634B7.4
hsa-miR-214-3p
0.904
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000582218
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-366
0.047
1
RP11-933H2.4
hsa-miR-214-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000502521
Biotype: antisense
Gene id: ENSG00000250608
Gene Name: RP11-933H2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
97-116
0.021
1
8mer
1678-1689
0.014
1
6mer
19-43
0.006
0
6mer
63-78
0.003
0
6mer
1166-1180
0.003
2
PCBP1-AS1
hsa-miR-214-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416506
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
381-403
0.042
3
6mer
175-191
0.005
1
SPECC1L-ADORA2A
hsa-miR-214-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_103546.1
Biotype: sense
Gene id: NR_103546.1 (gene)
Gene Name: SPECC1L-ADORA2A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5944-5960
0.014
7
8mer
5993-6016
0.007
0
7mer
2858-2882
0.003
3
6mer
5824-5848
0.003
4
6mer
3729-3748
0.003
8
6mer
5920-5939
0.003
5
7mer
4727-4751
0.003
5
6mer
4552-4564
0.002
8
6mer
5605-5629
0.002
1
6mer
2409-2415
0.002
2
6mer
3926-3948
0.002
4
6mer
4898-4915
0.001
5
6mer
4214-4231
0.001
2
6mer
4552-4572
0.001
9
RP11-436F23.1
hsa-miR-214-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502455
Biotype: antisense
Gene id: ENSG00000249330
Gene Name: RP11-436F23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-395
0.028
4
6mer
451-473
0.013
6
7mer
179-194
0.006
Not Conserved
CASK-AS1
hsa-miR-214-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000451126
Biotype: antisense
Gene id: ENSG00000233033
Gene Name: CASK-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
297-308
0.045
11
6mer
333-351
0.002
1
XLOC_000782
hsa-miR-214-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-214-3p
Sequence: acagcaggcacagacaggcagu
MirBase ID: MIMAT0000271
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-563
0.023
0
6mer
1573-1599
0.009
0
6mer
1570-1594
0.008
0
6mer
1358-1385
0.008
0
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