LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Gene
miRNA
Score
DIANA Links
RP11-542G1.3
hsa-miR-21-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512043
Biotype: lincRNA
Gene id: ENSG00000251383
Gene Name: RP11-542G1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1056-1080
0.025
1
LINC01198
hsa-miR-21-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000458282
Biotype: lincRNA
Gene id: ENSG00000231817
Gene Name: LINC01198
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-282
0.025
0
LINC00879
hsa-miR-21-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466560
Biotype: lincRNA
Gene id: ENSG00000239589
Gene Name: LINC00879
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-651
0.025
1
FREM2-AS1
hsa-miR-21-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000448887
Biotype: antisense
Gene id: ENSG00000225350
Gene Name: FREM2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-396
0.025
0
RP11-352B15.2
hsa-miR-21-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564385
Biotype: lincRNA
Gene id: ENSG00000260611
Gene Name: RP11-352B15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
330-351
0.013
0
6mer
502-525
0.012
0
NUTM2A-AS1
hsa-miR-21-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000446751
Biotype: antisense
Gene id: ENSG00000223482
Gene Name: NUTM2A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1454-1474
0.020
0
6mer
1963-1980
0.003
0
6mer
932-957
0.002
0
RP11-73G16.1
hsa-miR-21-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515329
Biotype: lincRNA
Gene id: ENSG00000251249
Gene Name: RP11-73G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
529-548
0.019
7
6mer
444-469
0.003
1
6mer
1095-1117
0.002
2
XLOC_012798
hsa-miR-21-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026698
Biotype: transcript isomorph
Gene id: XLOC_012798
Gene Name: XLOC_012798
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-361
0.018
1
6mer
328-352
0.007
2
AC005944.2
hsa-miR-21-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592758
Biotype: antisense
Gene id: ENSG00000267469
Gene Name: AC005944.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-105
0.017
1
6mer
321-334
0.008
5
RP11-693J15.5
hsa-miR-21-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5822-5838
0.005
4
7mer
1786-1805
0.004
0
7mer
9240-9266
0.004
0
6mer
5754-5772
0.004
7
7mer
2910-2927
0.003
1
6mer
9537-9551
0.002
0
6mer
4619-4637
0.002
0
AC012594.1
hsa-miR-21-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000613316
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
771-793
0.021
1
6mer
779-793
0.004
0
RP4-813F11.4
hsa-miR-21-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610021
Biotype: lincRNA
Gene id: ENSG00000273081
Gene Name: RP4-813F11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
826-842
0.021
1
6mer
2213-2238
0.004
0
RP11-378A12.1
hsa-miR-21-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000612422
Biotype: lincRNA
Gene id: ENSG00000277526
Gene Name: RP11-378A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
959-977
0.020
1
6mer
666-686
0.004
1
RP5-1096J16.1
hsa-miR-21-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000460400
Biotype: antisense
Gene id: ENSG00000243810
Gene Name: RP5-1096J16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-384
0.025
2
CTD-2311B13.5
hsa-miR-21-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000613990
Biotype: antisense
Gene id: ENSG00000275563
Gene Name: CTD-2311B13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1716-1738
0.013
1
6mer
237-261
0.007
0
6mer
52-78
0.005
1
MESTIT1
hsa-miR-21-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_004382.1
Biotype: antisense
Gene id: NR_004382.1 (gene)
Gene Name: MESTIT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1793-1809
0.021
3
6mer
561-578
0.002
0
6mer
1635-1656
0.002
2
RP11-305O4.3
hsa-miR-21-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608883
Biotype: antisense
Gene id: ENSG00000273455
Gene Name: RP11-305O4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
407-430
0.009
7
6mer
313-327
0.006
6
6mer
47-71
0.005
1
6mer
377-386
0.004
Not Conserved
RP11-561O23.5
hsa-miR-21-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000414223
Biotype: lincRNA
Gene id: ENSG00000234394
Gene Name: RP11-561O23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3267-3282
0.013
Not Conserved
7mer
2342-2358
0.009
1
6mer
2864-2882
0.003
Not Conserved
RP11-817I4.2
hsa-miR-21-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614539
Biotype: sense_intronic
Gene id: ENSG00000276115
Gene Name: RP11-817I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1648-1672
0.025
0
XLOC_006734
hsa-miR-21-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014463
Biotype: transcript isomorph
Gene id: XLOC_006734
Gene Name: XLOC_006734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-135
0.017
1
7mer
2687-2707
0.007
1
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