LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Gene
miRNA
Score
DIANA Links
RP11-171N4.1
hsa-miR-21-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510753
Biotype: lincRNA
Gene id: ENSG00000251511
Gene Name: RP11-171N4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-527
0.026
1
RP11-230G5.2
hsa-miR-21-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538294
Biotype: lincRNA
Gene id: ENSG00000250748
Gene Name: RP11-230G5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-174
0.026
1
RP11-171I2.2
hsa-miR-21-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603521
Biotype: antisense
Gene id: ENSG00000270574
Gene Name: RP11-171I2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1486-1492
0.015
Not Conserved
9mer
678-699
0.011
1
LINC01189
hsa-miR-21-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2112-2131
0.021
1
6mer
1428-1443
0.005
1
RP4-593H12.1
hsa-miR-21-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610269
Biotype: antisense
Gene id: ENSG00000272854
Gene Name: RP4-593H12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
293-317
0.026
2
RP11-300M24.1
hsa-miR-21-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605741
Biotype: lincRNA
Gene id: ENSG00000227455
Gene Name: RP11-300M24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3237-3257
0.023
1
6mer
2782-2802
0.003
1
NUTM2B-AS1
hsa-miR-21-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619625
Biotype: antisense
Gene id: ENSG00000225484
Gene Name: NUTM2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6940-6960
0.023
0
6mer
1775-1801
0.002
1
6mer
6418-6443
0.001
Not Conserved
RP5-828H9.4
hsa-miR-21-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611223
Biotype: lincRNA
Gene id: ENSG00000276688
Gene Name: RP5-828H9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-120
0.026
Not Conserved
LINC00891
hsa-miR-21-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_034005.1
Biotype: lincRNA
Gene id: NR_034005.1 (gene)
Gene Name: LINC00891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
817-841
0.016
1
6mer
817-835
0.009
1
LOC100132741
hsa-miR-21-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_034004.1
Biotype: lincRNA
Gene id: NR_034004.1 (gene)
Gene Name: LOC100132741
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-248
0.016
1
6mer
230-248
0.009
1
XLOC_004850
hsa-miR-21-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010941
Biotype: transcript isomorph
Gene id: XLOC_004850
Gene Name: XLOC_004850
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
469-492
0.016
1
6mer
264-278
0.006
1
6mer
2111-2128
0.004
0
RP11-148B6.1
hsa-miR-21-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510655
Biotype: antisense
Gene id: ENSG00000249532
Gene Name: RP11-148B6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-82
0.021
0
6mer
201-217
0.004
1
AC012594.1
hsa-miR-21-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000622590
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
627-649
0.022
1
6mer
635-649
0.004
0
AC009095.4
hsa-miR-21-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000388909
Biotype: antisense
Gene id: ENSG00000237718
Gene Name: AC009095.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
491-514
0.026
1
AC009133.21
hsa-miR-21-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000619159
Biotype: antisense
Gene id: ENSG00000275857
Gene Name: AC009133.21
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-115
0.014
1
7mer
59-82
0.011
0
XLOC_005326
hsa-miR-21-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011842
Biotype: transcript isomorph
Gene id: XLOC_005326
Gene Name: XLOC_005326
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-145
0.026
1
XLOC_005479
hsa-miR-21-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012608
Biotype: transcript isomorph
Gene id: XLOC_005479
Gene Name: XLOC_005479
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-159
0.021
3
6mer
1769-1790
0.004
4
XLOC_010279
hsa-miR-21-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
737-759
0.025
0
WWTR1-AS1
hsa-miR-21-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479752
Biotype: antisense
Gene id: ENSG00000241313
Gene Name: WWTR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1294-1314
0.023
1
6mer
1254-1270
0.003
0
RP11-1080G15.1
hsa-miR-21-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518417
Biotype: lincRNA
Gene id: ENSG00000253557
Gene Name: RP11-1080G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
656-672
0.025
1
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