LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Gene
miRNA
Score
DIANA Links
RP4-738P15.1
hsa-miR-21-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000438287
Biotype: lincRNA
Gene id: ENSG00000230725
Gene Name: RP4-738P15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-112
0.028
4
CTD-2162K18.3
hsa-miR-21-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588717
Biotype: lincRNA
Gene id: ENSG00000267353
Gene Name: CTD-2162K18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
325-343
0.017
1
6mer
164-183
0.006
0
6mer
706-727
0.005
0
RP11-381N20.1
hsa-miR-21-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508291
Biotype: lincRNA
Gene id: ENSG00000251526
Gene Name: RP11-381N20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-30
0.028
2
CTD-2528L19.6
hsa-miR-21-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588040
Biotype: lincRNA
Gene id: ENSG00000267152
Gene Name: CTD-2528L19.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-192
0.028
1
LINC00693
hsa-miR-21-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_038840.1
Biotype: lincRNA
Gene id: NR_038840.1 (gene)
Gene Name: LINC00693
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1397-1422
0.028
2
LINC00939
hsa-miR-21-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502479
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2173-2191
0.010
Not Conserved
8mer
3208-3226
0.008
0
6mer
4895-4921
0.004
1
6mer
4196-4221
0.004
2
6mer
2010-2031
0.002
4
XLOC_006460
hsa-miR-21-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013820
Biotype: transcript isomorph
Gene id: XLOC_006460
Gene Name: XLOC_006460
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
506-523
0.028
1
AP002954.3
hsa-miR-21-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530198
Biotype: antisense
Gene id: ENSG00000255176
Gene Name: AP002954.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-62
0.011
2
6mer
1360-1384
0.009
1
7mer
223-242
0.007
1
RP1-80N2.3
hsa-miR-21-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000563225
Biotype: lincRNA
Gene id: ENSG00000261211
Gene Name: RP1-80N2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3192-3206
0.025
2
6mer
882-906
0.002
Not Conserved
AC010729.2
hsa-miR-21-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413960
Biotype: lincRNA
Gene id: ENSG00000236106
Gene Name: AC010729.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-137
0.014
1
8mer
772-786
0.011
0
6mer
210-228
0.003
1
AC012594.1
hsa-miR-21-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000616148
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
710-732
0.024
1
6mer
718-732
0.004
0
RP11-521B24.5
hsa-miR-21-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000552675
Biotype: antisense
Gene id: ENSG00000257270
Gene Name: RP11-521B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-134
0.017
1
6mer
249-272
0.011
7
RP11-428L21.1
hsa-miR-21-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502570
Biotype: antisense
Gene id: ENSG00000248627
Gene Name: RP11-428L21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-126
0.027
1
XLOC_010133
hsa-miR-21-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020848
Biotype: transcript isomorph
Gene id: XLOC_010133
Gene Name: XLOC_010133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-430
0.027
0
GLIDR
hsa-miR-21-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_015363.1
Biotype: lincRNA
Gene id: NR_015363.1 (gene)
Gene Name: GLIDR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
261-285
0.021
1
9mer
529-550
0.006
Not Conserved
XLOC_007344
hsa-miR-21-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015666
Biotype: transcript isomorph
Gene id: XLOC_007344
Gene Name: XLOC_007344
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-283
0.027
0
CTA-292E10.9
hsa-miR-21-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24333-24344
0.013
1
6mer
372-387
0.003
4
6mer
308-325
0.003
1
6mer
12971-12991
0.002
1
6mer
10248-10264
0.002
5
6mer
1815-1838
0.001
2
6mer
5267-5293
0.001
0
6mer
22649-22671
0.001
1
6mer
12996-13017
0.001
2
XLOC_013463
hsa-miR-21-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028108
Biotype: transcript isomorph
Gene id: XLOC_013463
Gene Name: XLOC_013463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2285-2305
0.015
1
7mer
1275-1294
0.009
1
6mer
829-855
0.003
1
RP11-149P24.1
hsa-miR-21-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523150
Biotype: lincRNA
Gene id: ENSG00000253248
Gene Name: RP11-149P24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
259-273
0.027
1
XLOC_011025
hsa-miR-21-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023107
Biotype: transcript isomorph
Gene id: XLOC_011025
Gene Name: XLOC_011025
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-67
0.027
1
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