LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012796
hsa-miR-21-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026469
Biotype: transcript isomorph
Gene id: XLOC_012796
Gene Name: XLOC_012796
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-511
0.029
0
LOC100507577
hsa-miR-21-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_040677.1
Biotype: sense
Gene id: NR_040677.1 (gene)
Gene Name: LOC100507577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2163-2186
0.014
1
7mer
115-128
0.011
1
6mer
750-772
0.004
1
AC012594.1
hsa-miR-21-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620227
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-747
0.025
1
6mer
733-747
0.004
0
RP11-73G16.1
hsa-miR-21-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513759
Biotype: lincRNA
Gene id: ENSG00000251249
Gene Name: RP11-73G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
515-534
0.025
7
6mer
430-455
0.004
1
XLOC_004443
hsa-miR-21-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010006
Biotype: transcript isomorph
Gene id: XLOC_004443
Gene Name: XLOC_004443
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-483
0.029
0
RP11-715G15.1
hsa-miR-21-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419168
Biotype: lincRNA
Gene id: ENSG00000237468
Gene Name: RP11-715G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
364-384
0.015
1
7mer
1028-1041
0.009
1
6mer
1767-1790
0.006
3
XLOC_013387
hsa-miR-21-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027396
Biotype: transcript isomorph
Gene id: XLOC_013387
Gene Name: XLOC_013387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-79
0.029
0
ANKRD62P1-PARP4P3
hsa-miR-21-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000456726
Biotype: processed_transcript
Gene id: ENSG00000189295
Gene Name: ANKRD62P1-PARP4P3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-263
0.018
0
7mer
335-351
0.007
Not Conserved
6mer
698-717
0.003
0
RP11-614F17.2
hsa-miR-21-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514222
Biotype: lincRNA
Gene id: ENSG00000251676
Gene Name: RP11-614F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-345
0.029
1
RP11-642D21.1
hsa-miR-21-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519805
Biotype: sense_intronic
Gene id: ENSG00000254141
Gene Name: RP11-642D21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-290
0.026
6
6mer
438-465
0.003
0
XLOC_001596
hsa-miR-21-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003801
Biotype: transcript isomorph
Gene id: XLOC_001596
Gene Name: XLOC_001596
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-115
0.018
0
6mer
84-105
0.005
1
6mer
298-314
0.005
1
XLOC_005224
hsa-miR-21-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011763
Biotype: transcript isomorph
Gene id: XLOC_005224
Gene Name: XLOC_005224
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-62
0.024
0
6mer
199-216
0.005
1
CTD-2541J13.1
hsa-miR-21-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562669
Biotype: lincRNA
Gene id: ENSG00000260578
Gene Name: CTD-2541J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2031-2053
0.012
1
7mer
3089-3109
0.011
0
6mer
209-223
0.006
1
XLOC_002185
hsa-miR-21-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004320
Biotype: transcript isomorph
Gene id: XLOC_002185
Gene Name: XLOC_002185
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-132
0.019
1
6mer
314-338
0.005
0
6mer
584-602
0.004
0
XLOC_005180
hsa-miR-21-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011699
Biotype: transcript isomorph
Gene id: XLOC_005180
Gene Name: XLOC_005180
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
720-743
0.022
2
6mer
79-105
0.007
2
LINC00824
hsa-miR-21-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517583
Biotype: lincRNA
Gene id: ENSG00000254275
Gene Name: LINC00824
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
603-625
0.023
1
6mer
35-57
0.005
Not Conserved
XLOC_009419
hsa-miR-21-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019620
Biotype: transcript isomorph
Gene id: XLOC_009419
Gene Name: XLOC_009419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-29
0.028
0
CTD-2647L4.4
hsa-miR-21-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560865
Biotype: sense_intronic
Gene id: ENSG00000259366
Gene Name: CTD-2647L4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
312-320
0.028
2
RP11-378A12.1
hsa-miR-21-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000618928
Biotype: lincRNA
Gene id: ENSG00000277526
Gene Name: RP11-378A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
959-977
0.024
1
6mer
666-686
0.004
1
XLOC_006979
hsa-miR-21-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014506
Biotype: transcript isomorph
Gene id: XLOC_006979
Gene Name: XLOC_006979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
957-975
0.024
1
6mer
664-684
0.004
1
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