LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-21-5p


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Gene
miRNA
Score
DIANA Links
MIR4534
hsa-miR-21-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
45262-45279
0.006
0
7mer
23026-23046
0.004
1
9mer
5331-5352
0.003
0
7mer
32084-32111
0.002
1
6mer
16613-16634
0.002
0
6mer
31243-31263
0.002
4
6mer
1186-1211
0.002
0
6mer
17348-17374
0.002
1
6mer
52793-52812
0.002
2
6mer
24616-24633
0.001
1
6mer
11151-11176
0.001
0
6mer
46507-46532
0.001
1
6mer
8867-8889
0.001
1
6mer
34943-34969
0.001
0
6mer
40620-40642
0.001
0
RP11-356J5.12
hsa-miR-21-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000504610
Biotype: lincRNA
Gene id: ENSG00000250303
Gene Name: RP11-356J5.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-181
0.021
1
7mer
517-544
0.009
0
TSIX
hsa-miR-21-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2157-2168
0.006
0
8mer
21067-21092
0.005
1
6mer
36548-36573
0.003
1
7mer
33356-33375
0.003
0
6mer
33891-33916
0.002
2
6mer
29617-29637
0.002
1
6mer
18579-18603
0.002
1
6mer
19733-19759
0.002
1
6mer
7640-7664
0.002
0
6mer
22744-22763
0.002
1
6mer
21356-21381
0.001
1
6mer
12682-12697
0.001
Not Conserved
6mer
14659-14677
0.001
Not Conserved
LINC00879
hsa-miR-21-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466089
Biotype: lincRNA
Gene id: ENSG00000239589
Gene Name: LINC00879
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-537
0.030
1
XLOC_010575
hsa-miR-21-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021974
Biotype: transcript isomorph
Gene id: XLOC_010575
Gene Name: XLOC_010575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
513-530
0.021
1
7mer
340-352
0.008
Not Conserved
XLOC_005534
hsa-miR-21-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012014
Biotype: transcript isomorph
Gene id: XLOC_005534
Gene Name: XLOC_005534
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-88
0.030
5
RP11-81K13.1
hsa-miR-21-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547040
Biotype: antisense
Gene id: ENSG00000257434
Gene Name: RP11-81K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-304
0.021
2
6mer
2462-2484
0.009
9
XLOC_011175
hsa-miR-21-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023865
Biotype: transcript isomorph
Gene id: XLOC_011175
Gene Name: XLOC_011175
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-389
0.024
1
7mer
22-40
0.006
Not Conserved
AC074138.3
hsa-miR-21-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000425254
Biotype: lincRNA
Gene id: ENSG00000225975
Gene Name: AC074138.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-337
0.029
Not Conserved
RP11-328N19.1
hsa-miR-21-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512678
Biotype: lincRNA
Gene id: ENSG00000251350
Gene Name: RP11-328N19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1747-1773
0.019
0
6mer
288-315
0.004
1
6mer
1592-1616
0.003
2
6mer
1808-1829
0.002
1
6mer
1602-1620
0.001
1
XLOC_009783
hsa-miR-21-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020451
Biotype: transcript isomorph
Gene id: XLOC_009783
Gene Name: XLOC_009783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-196
0.029
0
RP11-174O3.3
hsa-miR-21-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494869
Biotype: antisense
Gene id: ENSG00000240661
Gene Name: RP11-174O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
586-604
0.023
4
6mer
529-548
0.007
5
RP1-301L19.1
hsa-miR-21-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000612841
Biotype: antisense
Gene id: ENSG00000225683
Gene Name: RP1-301L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-172
0.021
2
7mer
73-94
0.008
0
RP11-10C24.3
hsa-miR-21-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604982
Biotype: lincRNA
Gene id: ENSG00000271643
Gene Name: RP11-10C24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
994-1017
0.017
0
6mer
93-111
0.007
2
6mer
1235-1260
0.004
1
RP11-981G7.1
hsa-miR-21-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562242
Biotype: sense_overlapping
Gene id: ENSG00000261451
Gene Name: RP11-981G7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4537-4559
0.029
1
XLOC_008777
hsa-miR-21-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017951
Biotype: transcript isomorph
Gene id: XLOC_008777
Gene Name: XLOC_008777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
812-832
0.017
3
7mer
177-195
0.009
0
6mer
1085-1105
0.004
0
PART1
hsa-miR-21-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515734
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1920-1941
0.029
4
AC009410.1
hsa-miR-21-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432481
Biotype: lincRNA
Gene id: ENSG00000232023
Gene Name: AC009410.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
478-500
0.029
0
XLOC_010166
hsa-miR-21-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020889
Biotype: transcript isomorph
Gene id: XLOC_010166
Gene Name: XLOC_010166
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-197
0.021
2
6mer
115-133
0.008
2
XLOC_010856
hsa-miR-21-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022532
Biotype: transcript isomorph
Gene id: XLOC_010856
Gene Name: XLOC_010856
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-21-5p
Sequence: uagcuuaucagacugauguuga
MirBase ID: MIMAT0000076
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3892-3915
0.018
1
7mer
3054-3073
0.011
1
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