LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
SSBP3-AS1
hsa-miR-20b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000361350
Biotype: antisense
Gene id: ENSG00000198711
Gene Name: SSBP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2530-2555
0.014
7
6mer
202-218
0.007
1
7mer
1855-1871
0.004
0
RP4-717I23.3
hsa-miR-20b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411670
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
36-56
0.025
3
XLOC_006833
hsa-miR-20b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014749
Biotype: transcript isomorph
Gene id: XLOC_006833
Gene Name: XLOC_006833
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2018-2037
0.009
1
9mer
91-111
0.008
1
6mer
2875-2897
0.005
1
6mer
1670-1696
0.002
2
LINC01189
hsa-miR-20b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2286-2306
0.018
0
6mer
317-340
0.006
0
LINC00608
hsa-miR-20b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015390.1
Biotype: lincRNA
Gene id: NR_015390.1 (gene)
Gene Name: LINC00608
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
851-870
0.025
0
RP11-280K24.4
hsa-miR-20b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553312
Biotype: sense_overlapping
Gene id: ENSG00000258535
Gene Name: RP11-280K24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-67
0.009
0
6mer
5191-5210
0.006
2
6mer
5829-5848
0.005
2
6mer
4706-4733
0.003
1
6mer
4433-4459
0.002
2
XLOC_007542
hsa-miR-20b-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016146
Biotype: transcript isomorph
Gene id: XLOC_007542
Gene Name: XLOC_007542
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-49
0.019
10
7mer
157-182
0.006
1
AC005754.7
hsa-miR-20b-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607216
Biotype: antisense
Gene id: ENSG00000272154
Gene Name: AC005754.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-40
0.014
0
7mer
402-416
0.011
3
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