LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-20b-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_009633
hsa-miR-20b-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020288
Biotype: transcript isomorph
Gene id: XLOC_009633
Gene Name: XLOC_009633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-105
0.015
1
9mer
609-633
0.010
1
RAP2C-AS1
hsa-miR-20b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000441399
Biotype: antisense
Gene id: ENSG00000232160
Gene Name: RAP2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2108-2132
0.018
1
7mer
1126-1150
0.002
2
6mer
1092-1112
0.002
0
7mer
1172-1193
0.002
0
6mer
1742-1758
0.002
1
LAMTOR5-AS1
hsa-miR-20b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609512
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
898-918
0.020
1
6mer
822-843
0.004
1
RP11-17M24.1
hsa-miR-20b-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584758
Biotype: sense_intronic
Gene id: ENSG00000265356
Gene Name: RP11-17M24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-511
0.025
1
RP11-256P1.1
hsa-miR-20b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504539
Biotype: antisense
Gene id: ENSG00000249971
Gene Name: RP11-256P1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
324-336
0.012
9
6mer
358-379
0.012
8
RP11-486L19.2
hsa-miR-20b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000536986
Biotype: antisense
Gene id: ENSG00000250685
Gene Name: RP11-486L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
531-551
0.015
1
9mer
247-266
0.009
1
6mer
1452-1476
0.002
0
XLOC_012728
hsa-miR-20b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026218
Biotype: transcript isomorph
Gene id: XLOC_012728
Gene Name: XLOC_012728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5037-5061
0.009
0
9mer
4237-4259
0.007
0
6mer
4567-4584
0.004
0
6mer
1366-1392
0.003
2
6mer
3815-3827
0.002
1
RP11-222K16.1
hsa-miR-20b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607601
Biotype: lincRNA
Gene id: ENSG00000271943
Gene Name: RP11-222K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
344-362
0.007
3
6mer
217-226
0.007
1
6mer
21-35
0.006
1
6mer
145-168
0.005
0
THRB-AS1
hsa-miR-20b-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609230
Biotype: lincRNA
Gene id: ENSG00000228791
Gene Name: THRB-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-341
0.017
1
6mer
17-40
0.008
3
RP4-671O14.7
hsa-miR-20b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
12908-12928
0.007
1
9mer
9919-9938
0.004
0
6mer
18057-18080
0.003
0
9mer
8569-8589
0.002
0
7mer
14392-14416
0.002
1
6mer
2154-2174
0.002
3
9mer
5721-5745
0.002
Not Conserved
6mer
2118-2142
0.001
5
6mer
5876-5892
0.001
Not Conserved
ERC2-IT1
hsa-miR-20b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_024615.1
Biotype: sense
Gene id: NR_024615.1 (gene)
Gene Name: ERC2-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
665-679
0.016
2
6mer
601-622
0.003
1
7mer
515-539
0.003
1
6mer
1250-1271
0.002
1
KTN1-AS1
hsa-miR-20b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000412224
Biotype: antisense
Gene id: ENSG00000186615
Gene Name: KTN1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
81-101
0.009
0
6mer
359-372
0.007
3
6mer
698-721
0.003
0
7mer
1045-1062
0.003
1
6mer
614-632
0.003
0
EPB41L4A-AS1
hsa-miR-20b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000427306
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
852-867
0.025
1
RP11-53B2.1
hsa-miR-20b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000624889
Biotype: TEC
Gene id: ENSG00000267529
Gene Name: RP11-53B2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
52-77
0.013
0
7mer
99-123
0.012
0
CTC-444N24.11
hsa-miR-20b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593427
Biotype: lincRNA
Gene id: ENSG00000268205
Gene Name: CTC-444N24.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2357-2368
0.012
1
9mer
468-493
0.005
0
6mer
3839-3857
0.005
1
6mer
445-464
0.003
0
RP1-225E12.2
hsa-miR-20b-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591102
Biotype: antisense
Gene id: ENSG00000231329
Gene Name: RP1-225E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-344
0.017
1
7mer
674-686
0.007
0
LINC00243
hsa-miR-20b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000399196
Biotype: lincRNA
Gene id: ENSG00000214894
Gene Name: LINC00243
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
251-270
0.014
1
9mer
907-927
0.010
1
PRICKLE2-AS1
hsa-miR-20b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476308
Biotype: antisense
Gene id: ENSG00000241572
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
512-537
0.025
2
LINC00664
hsa-miR-20b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3406-3422
0.013
1
6mer
3456-3478
0.012
1
CTC-565M22.1
hsa-miR-20b-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593140
Biotype: lincRNA
Gene id: ENSG00000267760
Gene Name: CTC-565M22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
479-505
0.025
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept