LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
RP11-504I13.3
hsa-miR-20b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583287
Biotype: antisense
Gene id: ENSG00000263982
Gene Name: RP11-504I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
166-190
0.026
1
LINC00939
hsa-miR-20b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502479
Biotype: lincRNA
Gene id: ENSG00000249267
Gene Name: LINC00939
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
579-601
0.016
0
7mer
4660-4686
0.007
2
6mer
1331-1353
0.002
1
RP11-557H15.4
hsa-miR-20b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434593
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-145
0.026
Not Conserved
RP3-395M20.8
hsa-miR-20b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443892
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
103-127
0.026
1
SC22CB-109E1.1
hsa-miR-20b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2074-2095
0.007
1
6mer
538-562
0.006
1
7mer
9706-9730
0.004
0
7mer
3986-4010
0.003
0
7mer
2141-2163
0.002
1
7mer
5989-6004
0.002
1
7mer
2561-2587
0.001
0
RP11-104L21.3
hsa-miR-20b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610044
Biotype: lincRNA
Gene id: ENSG00000273160
Gene Name: RP11-104L21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-44
0.026
1
RP11-428J1.4
hsa-miR-20b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606227
Biotype: lincRNA
Gene id: ENSG00000271978
Gene Name: RP11-428J1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2521-2539
0.026
0
XLOC_014368
hsa-miR-20b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029349
Biotype: transcript isomorph
Gene id: XLOC_014368
Gene Name: XLOC_014368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-805
0.026
1
XLOC_010715
hsa-miR-20b-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022104
Biotype: transcript isomorph
Gene id: XLOC_010715
Gene Name: XLOC_010715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
747-770
0.026
0
RP11-290F20.1
hsa-miR-20b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_034124.1
Biotype: lincRNA
Gene id: NR_034124.1 (gene)
Gene Name: RP11-290F20.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-43
0.026
5
CTD-2378E12.1
hsa-miR-20b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619889
Biotype: lincRNA
Gene id: ENSG00000273674
Gene Name: CTD-2378E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-69
0.026
0
RP11-18B16.2
hsa-miR-20b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428292
Biotype: lincRNA
Gene id: ENSG00000227482
Gene Name: RP11-18B16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
863-882
0.018
2
7mer
549-569
0.007
1
RP11-397A16.3
hsa-miR-20b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2467-2484
0.026
1
XLOC_007089
hsa-miR-20b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1174-1196
0.024
1
6mer
9354-9372
0.001
Not Conserved
RP4-717I23.3
hsa-miR-20b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432741
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
231-251
0.026
3
RP11-494M8.4
hsa-miR-20b-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527847
Biotype: sense_overlapping
Gene id: ENSG00000254951
Gene Name: RP11-494M8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
245-269
0.010
1
7mer
786-809
0.007
4
6mer
391-410
0.005
1
6mer
1359-1382
0.003
1
6mer
1740-1762
0.002
0
RP11-586K12.10
hsa-miR-20b-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1889-1904
0.017
0
6mer
823-848
0.008
0
AC012593.1
hsa-miR-20b-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588944
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
262-288
0.014
1
6mer
582-602
0.012
1
XLOC_005493
hsa-miR-20b-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011982
Biotype: transcript isomorph
Gene id: XLOC_005493
Gene Name: XLOC_005493
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
334-342
0.026
0
RP11-254F7.2
hsa-miR-20b-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567540
Biotype: lincRNA
Gene id: ENSG00000260077
Gene Name: RP11-254F7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
34-56
0.007
1
6mer
1524-1537
0.004
0
6mer
54-71
0.004
1
6mer
546-564
0.004
1
6mer
685-710
0.003
2
6mer
82-102
0.003
Not Conserved
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