LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
LINC01483
hsa-miR-20b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433856
Biotype: lincRNA
Gene id: ENSG00000227517
Gene Name: LINC01483
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2814-2837
0.011
1
6mer
575-585
0.004
1
6mer
1039-1047
0.003
2
6mer
856-872
0.003
2
7mer
1469-1493
0.002
1
9mer
1796-1820
0.002
Not Conserved
AC007405.4
hsa-miR-20b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000624287
Biotype: lincRNA
Gene id: ENSG00000234350
Gene Name: AC007405.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-248
0.026
1
CTD-2620I22.3
hsa-miR-20b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596769
Biotype: lincRNA
Gene id: ENSG00000267943
Gene Name: CTD-2620I22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3781-3801
0.018
1
6mer
2912-2935
0.004
1
6mer
871-893
0.003
0
7mer
2966-2989
0.002
0
XLOC_004192
hsa-miR-20b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008673
Biotype: transcript isomorph
Gene id: XLOC_004192
Gene Name: XLOC_004192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2468-2491
0.013
1
6mer
3059-3077
0.004
3
6mer
628-654
0.003
2
6mer
2867-2877
0.003
1
6mer
1366-1388
0.002
0
6mer
1937-1956
0.001
1
CTA-212A2.3
hsa-miR-20b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2777-2797
0.004
0
9mer
13519-13539
0.004
0
9mer
6827-6847
0.004
1
7mer
8294-8319
0.004
1
9mer
7168-7188
0.003
0
9mer
3378-3402
0.003
0
6mer
12457-12476
0.002
1
6mer
9935-9953
0.002
0
7mer
12666-12690
0.001
Not Conserved
XLOC_010017
hsa-miR-20b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020167
Biotype: transcript isomorph
Gene id: XLOC_010017
Gene Name: XLOC_010017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2061-2074
0.014
5
6mer
3-23
0.006
1
6mer
1240-1260
0.005
3
RP11-857B24.5
hsa-miR-20b-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555157
Biotype: antisense
Gene id: ENSG00000258949
Gene Name: RP11-857B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-208
0.026
1
CTD-2310F14.1
hsa-miR-20b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606813
Biotype: antisense
Gene id: ENSG00000271828
Gene Name: CTD-2310F14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1432-1452
0.007
1
7mer
207-225
0.006
0
7mer
406-433
0.006
1
6mer
287-303
0.004
1
6mer
646-670
0.003
2
RP11-333A23.4
hsa-miR-20b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520259
Biotype: lincRNA
Gene id: ENSG00000253967
Gene Name: RP11-333A23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1186-1205
0.009
1
9mer
78-98
0.008
1
6mer
2043-2065
0.005
1
6mer
838-864
0.004
2
GRM5-AS1
hsa-miR-20b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526448
Biotype: antisense
Gene id: ENSG00000255082
Gene Name: GRM5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-324
0.018
2
6mer
4492-4517
0.006
3
7mer
1154-1176
0.002
2
RP11-96C23.5
hsa-miR-20b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000433214
Biotype: processed_transcript
Gene id: ENSG00000271880
Gene Name: RP11-96C23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
678-704
0.024
1
6mer
1046-1062
0.002
0
XLOC_009900
hsa-miR-20b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020237
Biotype: transcript isomorph
Gene id: XLOC_009900
Gene Name: XLOC_009900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1378-1402
0.014
1
9mer
1094-1114
0.006
0
7mer
1539-1565
0.005
1
RP11-380D23.1
hsa-miR-20b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503998
Biotype: antisense
Gene id: ENSG00000250511
Gene Name: RP11-380D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
916-930
0.011
1
6mer
1232-1258
0.007
5
7mer
1080-1105
0.004
1
6mer
986-999
0.004
1
HCG18
hsa-miR-20b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454269
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-113
0.022
1
6mer
1039-1062
0.002
2
6mer
1304-1308
0.002
0
HCG18
hsa-miR-20b-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444126
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-113
0.021
1
6mer
1039-1062
0.002
2
6mer
1304-1308
0.002
0
6mer
1847-1872
0.001
1
PCAT19
hsa-miR-20b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594315
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
381-402
0.015
1
6mer
603-629
0.011
1
HCG18
hsa-miR-20b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454129
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-113
0.021
1
6mer
1039-1062
0.002
2
6mer
1304-1308
0.002
0
6mer
1847-1872
0.001
1
RP11-254F19.3
hsa-miR-20b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569104
Biotype: lincRNA
Gene id: ENSG00000260340
Gene Name: RP11-254F19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-181
0.026
1
RP11-12A16.3
hsa-miR-20b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437097
Biotype: antisense
Gene id: ENSG00000227068
Gene Name: RP11-12A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
279-302
0.015
2
7mer
53-67
0.011
0
LINC00520
hsa-miR-20b-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000560267
Biotype: lincRNA
Gene id: ENSG00000258791
Gene Name: LINC00520
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-84
0.026
1
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