LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
HCG18
hsa-miR-20b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449544
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-113
0.021
1
6mer
1039-1062
0.003
2
6mer
1304-1308
0.002
0
6mer
1847-1872
0.001
1
AC003986.6
hsa-miR-20b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419944
Biotype: antisense
Gene id: ENSG00000232821
Gene Name: AC003986.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-244
0.016
9
7mer
518-530
0.006
4
6mer
318-332
0.004
3
TTN-AS1
hsa-miR-20b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419746
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4418-4435
0.011
11
6mer
340-358
0.010
9
7mer
3515-3526
0.003
8
6mer
3439-3457
0.002
4
XLOC_002384
hsa-miR-20b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004489
Biotype: transcript isomorph
Gene id: XLOC_002384
Gene Name: XLOC_002384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1076-1100
0.014
1
7mer
1364-1379
0.011
1
6mer
813-837
0.002
Not Conserved
RP11-629B11.5
hsa-miR-20b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000600169
Biotype: antisense
Gene id: ENSG00000269559
Gene Name: RP11-629B11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
760-776
0.009
1
7mer
132-147
0.008
1
6mer
1045-1069
0.005
4
6mer
1284-1301
0.003
1
6mer
1265-1281
0.001
1
XLOC_009034
hsa-miR-20b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019201
Biotype: transcript isomorph
Gene id: XLOC_009034
Gene Name: XLOC_009034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-177
0.018
0
6mer
181-203
0.009
2
LINC01018
hsa-miR-20b-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505626
Biotype: lincRNA
Gene id: ENSG00000250056
Gene Name: LINC01018
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2646-2666
0.013
1
7mer
2168-2181
0.008
0
6mer
2390-2412
0.003
1
6mer
2379-2395
0.002
Not Conserved
XLOC_013577
hsa-miR-20b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028233
Biotype: transcript isomorph
Gene id: XLOC_013577
Gene Name: XLOC_013577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1359-1379
0.026
1
RP11-433A10.2
hsa-miR-20b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491567
Biotype: lincRNA
Gene id: ENSG00000242618
Gene Name: RP11-433A10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
673-691
0.019
0
6mer
667-679
0.004
1
6mer
516-534
0.003
1
XLOC_010219
hsa-miR-20b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020953
Biotype: transcript isomorph
Gene id: XLOC_010219
Gene Name: XLOC_010219
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1119-1141
0.021
Not Conserved
6mer
154-172
0.006
0
RP11-166B2.3
hsa-miR-20b-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568144
Biotype: sense_intronic
Gene id: ENSG00000261560
Gene Name: RP11-166B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-861
0.014
0
9mer
84-104
0.013
1
XLOC_011806
hsa-miR-20b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024487
Biotype: transcript isomorph
Gene id: XLOC_011806
Gene Name: XLOC_011806
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-246
0.026
1
XLOC_004978
hsa-miR-20b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010460
Biotype: transcript isomorph
Gene id: XLOC_004978
Gene Name: XLOC_004978
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1396-1413
0.016
9
7mer
748-775
0.006
1
7mer
649-659
0.004
1
RP1-168L15.5
hsa-miR-20b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000568025
Biotype: antisense
Gene id: ENSG00000261420
Gene Name: RP1-168L15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1068-1092
0.013
1
8mer
333-353
0.007
1
9mer
749-773
0.004
Not Conserved
6mer
653-672
0.002
0
RP11-463J10.2
hsa-miR-20b-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556834
Biotype: antisense
Gene id: ENSG00000258928
Gene Name: RP11-463J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
333-354
0.026
0
CTC-471J1.2
hsa-miR-20b-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000569091
Biotype: sense_overlapping
Gene id: ENSG00000260160
Gene Name: CTC-471J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-173
0.026
1
LINC00645
hsa-miR-20b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557399
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3465-3477
0.006
1
7mer
2043-2068
0.004
1
7mer
2406-2426
0.004
1
7mer
661-676
0.004
1
6mer
1362-1376
0.003
1
6mer
2886-2909
0.002
0
6mer
1715-1736
0.001
0
6mer
2131-2148
0.001
3
LINC01360
hsa-miR-20b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440762
Biotype: lincRNA
Gene id: ENSG00000233973
Gene Name: LINC01360
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1251-1272
0.009
0
6mer
3415-3437
0.005
1
9mer
1806-1830
0.004
1
6mer
2611-2620
0.004
2
6mer
3481-3502
0.004
1
RP11-61A14.3
hsa-miR-20b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563086
Biotype: lincRNA
Gene id: ENSG00000261088
Gene Name: RP11-61A14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
518-537
0.008
1
8mer
827-846
0.007
1
6mer
1198-1213
0.006
4
6mer
60-87
0.005
1
CTD-2525I3.6
hsa-miR-20b-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594379
Biotype: antisense
Gene id: ENSG00000269535
Gene Name: CTD-2525I3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1718-1742
0.011
0
6mer
9-30
0.006
0
7mer
421-440
0.005
Not Conserved
6mer
932-949
0.003
1
6mer
989-1013
0.002
1
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