LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
LINC00938
hsa-miR-20b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5754-5772
0.010
5
9mer
2886-2906
0.006
1
6mer
156-173
0.004
0
6mer
6479-6493
0.003
2
6mer
8190-8209
0.002
Not Conserved
6mer
6000-6019
0.002
1
RP11-404P21.5
hsa-miR-20b-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555383
Biotype: sense_intronic
Gene id: ENSG00000258412
Gene Name: RP11-404P21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-435
0.027
1
MUC19
hsa-miR-20b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543564
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-95
0.016
0
6mer
255-277
0.010
8
LINC00029
hsa-miR-20b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000370341
Biotype: lincRNA
Gene id: ENSG00000125514
Gene Name: LINC00029
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-96
0.027
1
FRMD6-AS1
hsa-miR-20b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000617151
Biotype: antisense
Gene id: ENSG00000273888
Gene Name: FRMD6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-183
0.015
0
9mer
510-530
0.006
1
6mer
1358-1384
0.003
3
9mer
1140-1164
0.003
Not Conserved
LOC100128885
hsa-miR-20b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3114-3135
0.013
0
6mer
4287-4307
0.007
0
6mer
3312-3329
0.005
0
6mer
2646-2663
0.001
Not Conserved
RP11-674P19.2
hsa-miR-20b-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579651
Biotype: lincRNA
Gene id: ENSG00000264705
Gene Name: RP11-674P19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
727-754
0.016
0
6mer
265-289
0.007
2
6mer
1115-1128
0.003
0
XLOC_006001
hsa-miR-20b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012869
Biotype: transcript isomorph
Gene id: XLOC_006001
Gene Name: XLOC_006001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-244
0.016
9
7mer
518-530
0.006
4
6mer
318-332
0.004
3
XLOC_003276
hsa-miR-20b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006679
Biotype: transcript isomorph
Gene id: XLOC_003276
Gene Name: XLOC_003276
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-29
0.027
7
RP11-537P22.2
hsa-miR-20b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554595
Biotype: sense_intronic
Gene id: ENSG00000258827
Gene Name: RP11-537P22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-18
0.027
1
RP11-116D17.2
hsa-miR-20b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546696
Biotype: lincRNA
Gene id: ENSG00000257519
Gene Name: RP11-116D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-52
0.027
3
RP5-1065J22.8
hsa-miR-20b-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608574
Biotype: antisense
Gene id: ENSG00000273382
Gene Name: RP5-1065J22.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2156-2175
0.007
Not Conserved
9mer
699-723
0.006
1
9mer
2288-2307
0.006
1
9mer
1044-1068
0.004
1
7mer
1671-1692
0.003
1
RP11-930P14.1
hsa-miR-20b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520418
Biotype: antisense
Gene id: ENSG00000253389
Gene Name: RP11-930P14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
390-408
0.018
1
9mer
521-545
0.008
1
NOP14-AS1
hsa-miR-20b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503709
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-424
0.026
0
RP13-20L14.1
hsa-miR-20b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000566971
Biotype: lincRNA
Gene id: ENSG00000260011
Gene Name: RP13-20L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
245-269
0.019
0
7mer
190-214
0.008
0
RP1-166H4.2
hsa-miR-20b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000563807
Biotype: lincRNA
Gene id: ENSG00000261080
Gene Name: RP1-166H4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1086-1109
0.026
1
LINC00608
hsa-miR-20b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432733
Biotype: lincRNA
Gene id: ENSG00000236445
Gene Name: LINC00608
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
851-870
0.015
0
8mer
1984-2005
0.004
1
9mer
1315-1339
0.003
1
6mer
1277-1297
0.002
1
6mer
1628-1644
0.002
1
AP000265.1
hsa-miR-20b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000565959
Biotype: lincRNA
Gene id: ENSG00000261610
Gene Name: AP000265.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
28-54
0.011
4
7mer
1227-1242
0.009
1
6mer
327-354
0.004
1
6mer
1575-1588
0.003
1
LINC01207
hsa-miR-20b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507311
Biotype: lincRNA
Gene id: ENSG00000248771
Gene Name: LINC01207
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2862-2880
0.016
1
6mer
860-878
0.005
2
9mer
1295-1319
0.003
0
6mer
2034-2060
0.002
1
CTD-2035E11.3
hsa-miR-20b-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509036
Biotype: antisense
Gene id: ENSG00000251131
Gene Name: CTD-2035E11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
161-185
0.026
1
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