LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_006857
hsa-miR-20b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014542
Biotype: transcript isomorph
Gene id: XLOC_006857
Gene Name: XLOC_006857
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1558-1583
0.027
Not Conserved
RP11-588H23.3
hsa-miR-20b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548687
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-474
0.011
1
9mer
5484-5508
0.005
0
7mer
653-669
0.005
3
6mer
3134-3158
0.002
2
6mer
4072-4093
0.002
1
6mer
3710-3727
0.001
2
6mer
3328-3354
0.001
1
RP11-282K24.3
hsa-miR-20b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4173-4193
0.015
0
6mer
5373-5389
0.006
0
6mer
4618-4637
0.004
1
6mer
581-598
0.003
1
ACVR2B-AS1
hsa-miR-20b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441531
Biotype: antisense
Gene id: ENSG00000229589
Gene Name: ACVR2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2157-2177
0.014
0
8mer
1668-1686
0.011
0
7mer
1313-1331
0.002
3
AC023481.1
hsa-miR-20b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000435368
Biotype: lincRNA
Gene id: ENSG00000231401
Gene Name: AC023481.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-255
0.017
1
8mer
93-118
0.010
0
RP11-63M22.1
hsa-miR-20b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565082
Biotype: lincRNA
Gene id: ENSG00000260558
Gene Name: RP11-63M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-289
0.027
1
RP11-869B15.1
hsa-miR-20b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000598393
Biotype: lincRNA
Gene id: ENSG00000269290
Gene Name: RP11-869B15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-274
0.020
0
7mer
516-543
0.007
0
LINC01125
hsa-miR-20b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596356
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-382
0.018
0
8mer
397-407
0.009
0
RP11-363G2.4
hsa-miR-20b-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1803-1825
0.018
0
6mer
1177-1195
0.009
0
RP11-862G15.2
hsa-miR-20b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555299
Biotype: lincRNA
Gene id: ENSG00000258499
Gene Name: RP11-862G15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1287-1304
0.014
0
8mer
595-615
0.013
1
XLOC_014038
hsa-miR-20b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028904
Biotype: transcript isomorph
Gene id: XLOC_014038
Gene Name: XLOC_014038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
249-276
0.008
0
6mer
2370-2382
0.006
1
6mer
511-537
0.004
1
6mer
327-344
0.004
1
6mer
1688-1704
0.003
0
6mer
808-830
0.003
0
RP11-798G7.8
hsa-miR-20b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587960
Biotype: lincRNA
Gene id: ENSG00000266918
Gene Name: RP11-798G7.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1797-1820
0.007
1
6mer
789-813
0.006
2
7mer
1830-1857
0.006
1
9mer
1311-1330
0.005
1
6mer
1245-1263
0.003
3
AC002454.1
hsa-miR-20b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110086.1
Biotype: antisense
Gene id: NR_110086.1 (gene)
Gene Name: AC002454.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
756-780
0.017
8
6mer
834-854
0.011
7
RP11-138P22.1
hsa-miR-20b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581901
Biotype: antisense
Gene id: ENSG00000266527
Gene Name: RP11-138P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2005-2025
0.010
1
6mer
186-209
0.007
5
7mer
1470-1492
0.006
0
6mer
1290-1305
0.005
5
AP006285.7
hsa-miR-20b-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000415865
Biotype: lincRNA
Gene id: ENSG00000231487
Gene Name: AP006285.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-317
0.016
1
7mer
192-219
0.011
1
AC009158.1
hsa-miR-20b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000596241
Biotype: lincRNA
Gene id: ENSG00000231876
Gene Name: AC009158.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-300
0.027
4
TPTEP1
hsa-miR-20b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415121
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1003-1015
0.027
1
XLOC_006153
hsa-miR-20b-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013023
Biotype: transcript isomorph
Gene id: XLOC_006153
Gene Name: XLOC_006153
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-272
0.011
0
8mer
391-411
0.009
0
6mer
109-113
0.007
1
DISC2
hsa-miR-20b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_002227.2
Biotype: antisense
Gene id: NR_002227.2 (gene)
Gene Name: DISC2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3589-3612
0.020
0
7mer
2412-2435
0.005
0
6mer
1869-1883
0.002
2
RP11-490G2.2
hsa-miR-20b-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000561881
Biotype: lincRNA
Gene id: ENSG00000259946
Gene Name: RP11-490G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1715-1731
0.019
3
6mer
1725-1749
0.008
4
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