LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
LINC01197
hsa-miR-20b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555332
Biotype: lincRNA
Gene id: ENSG00000248441
Gene Name: LINC01197
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
913-934
0.026
3
6mer
661-684
0.002
1
XLOC_012593
hsa-miR-20b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025154
Biotype: transcript isomorph
Gene id: XLOC_012593
Gene Name: XLOC_012593
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
242-266
0.019
0
7mer
187-211
0.009
0
MEG3
hsa-miR-20b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
982-1004
0.022
4
6mer
385-406
0.003
0
6mer
2498-2514
0.002
3
6mer
2284-2301
0.001
1
RP11-573G6.6
hsa-miR-20b-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000566763
Biotype: lincRNA
Gene id: ENSG00000261671
Gene Name: RP11-573G6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-115
0.023
0
6mer
683-706
0.005
1
XLOC_001584
hsa-miR-20b-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002947
Biotype: transcript isomorph
Gene id: XLOC_001584
Gene Name: XLOC_001584
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-80
0.028
1
PART1
hsa-miR-20b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504876
Biotype: lincRNA
Gene id: ENSG00000152931
Gene Name: PART1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-31
0.008
2
7mer
306-332
0.005
1
7mer
1625-1650
0.003
1
7mer
275-288
0.003
0
6mer
5131-5158
0.003
0
9mer
3390-3414
0.003
1
6mer
3737-3759
0.002
4
RP4-620F22.2
hsa-miR-20b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437128
Biotype: antisense
Gene id: ENSG00000237568
Gene Name: RP4-620F22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-123
0.028
0
AP001605.4
hsa-miR-20b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447384
Biotype: lincRNA
Gene id: ENSG00000236332
Gene Name: AP001605.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-158
0.028
0
LAMTOR5-AS1
hsa-miR-20b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609709
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
703-723
0.024
1
6mer
475-496
0.004
1
RP1-137K2.2
hsa-miR-20b-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442936
Biotype: antisense
Gene id: ENSG00000233044
Gene Name: RP1-137K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21-45
0.023
1
6mer
34-58
0.005
0
AC159540.2
hsa-miR-20b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000619740
Biotype: lincRNA
Gene id: ENSG00000278766
Gene Name: AC159540.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-90
0.028
1
RP11-83B20.1
hsa-miR-20b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543970
Biotype: lincRNA
Gene id: ENSG00000214650
Gene Name: RP11-83B20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1053-1073
0.028
1
XLOC_005514
hsa-miR-20b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012001
Biotype: transcript isomorph
Gene id: XLOC_005514
Gene Name: XLOC_005514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1410-1434
0.010
1
6mer
2080-2084
0.005
Not Conserved
6mer
2369-2393
0.005
1
6mer
871-889
0.004
2
6mer
1174-1199
0.002
0
8mer
1191-1213
0.002
1
RGS5
hsa-miR-20b-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000526176
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-69
0.028
1
RP11-362F19.1
hsa-miR-20b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509161
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
993-1008
0.023
1
6mer
2019-2035
0.005
4
KB-208E9.1
hsa-miR-20b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608615
Biotype: lincRNA
Gene id: ENSG00000272733
Gene Name: KB-208E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
762-775
0.028
0
RP11-626K17.3
hsa-miR-20b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565549
Biotype: lincRNA
Gene id: ENSG00000261541
Gene Name: RP11-626K17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3533-3553
0.008
0
7mer
3851-3872
0.008
1
9mer
2209-2228
0.005
0
7mer
1816-1834
0.003
0
6mer
999-1022
0.003
1
XLOC_003234
hsa-miR-20b-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006633
Biotype: transcript isomorph
Gene id: XLOC_003234
Gene Name: XLOC_003234
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
26-50
0.019
1
7mer
1762-1777
0.008
2
RP11-338L22.2
hsa-miR-20b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584258
Biotype: antisense
Gene id: ENSG00000263477
Gene Name: RP11-338L22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-660
0.008
1
6mer
298-321
0.006
1
6mer
542-566
0.006
3
6mer
489-506
0.005
1
6mer
463-479
0.004
0
RP4-717I23.3
hsa-miR-20b-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440778
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
145-165
0.027
3
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