LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
AC079163.1
hsa-miR-20b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418416
Biotype: lincRNA
Gene id: ENSG00000226218
Gene Name: AC079163.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-258
0.024
0
6mer
271-289
0.005
0
AC009158.1
hsa-miR-20b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000452511
Biotype: lincRNA
Gene id: ENSG00000231876
Gene Name: AC009158.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
702-725
0.029
4
CTD-2561J22.5
hsa-miR-20b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600469
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-49
0.022
1
6mer
550-563
0.007
0
XLOC_006133
hsa-miR-20b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013490
Biotype: transcript isomorph
Gene id: XLOC_006133
Gene Name: XLOC_006133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
273-297
0.019
1
6mer
178-197
0.010
1
RP11-503C24.2
hsa-miR-20b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000424343
Biotype: lincRNA
Gene id: ENSG00000237987
Gene Name: RP11-503C24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
128-147
0.015
2
6mer
91-115
0.014
2
XLOC_005703
hsa-miR-20b-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012157
Biotype: transcript isomorph
Gene id: XLOC_005703
Gene Name: XLOC_005703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
75-93
0.029
1
CTD-2313F11.1
hsa-miR-20b-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607910
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-460
0.029
1
RP11-967K21.1
hsa-miR-20b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617468
Biotype: antisense
Gene id: ENSG00000247934
Gene Name: RP11-967K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-320
0.008
1
6mer
406-410
0.006
1
6mer
60-74
0.005
2
6mer
1950-1974
0.003
1
6mer
1817-1841
0.003
1
6mer
1141-1158
0.003
3
6mer
1605-1621
0.002
Not Conserved
RP11-126K15.1
hsa-miR-20b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578740
Biotype: lincRNA
Gene id: ENSG00000265380
Gene Name: RP11-126K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-40
0.029
4
STARD13-AS
hsa-miR-20b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608315
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.029
4
STARD13-AS
hsa-miR-20b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609615
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-81
0.029
4
LINC00029
hsa-miR-20b-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000414668
Biotype: lincRNA
Gene id: ENSG00000125514
Gene Name: LINC00029
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-96
0.029
1
RP4-803J11.2
hsa-miR-20b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418348
Biotype: antisense
Gene id: ENSG00000237481
Gene Name: RP4-803J11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-251
0.019
0
6mer
197-213
0.005
1
6mer
181-201
0.005
1
XXbac-BPGBPG55C20.2
hsa-miR-20b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606125
Biotype: lincRNA
Gene id: ENSG00000272316
Gene Name: XXbac-BPGBPG55C20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4417-4440
0.011
Not Conserved
7mer
477-499
0.005
0
6mer
5035-5050
0.003
Not Conserved
6mer
1421-1437
0.003
2
6mer
2819-2845
0.002
2
6mer
1953-1976
0.002
0
6mer
2322-2347
0.002
0
6mer
3910-3934
0.001
Not Conserved
XLOC_011448
hsa-miR-20b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8101-8122
0.008
3
9mer
9261-9285
0.006
0
6mer
9563-9586
0.005
1
9mer
902-926
0.004
0
6mer
7371-7395
0.002
1
6mer
8598-8609
0.002
1
6mer
8854-8874
0.002
1
LINC01410
hsa-miR-20b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1764-1782
0.029
0
STARD13-AS
hsa-miR-20b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608539
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.029
4
RP11-710F7.3
hsa-miR-20b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513220
Biotype: antisense
Gene id: ENSG00000249635
Gene Name: RP11-710F7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2316-2334
0.010
1
7mer
3011-3037
0.006
1
6mer
95-99
0.006
0
7mer
3124-3143
0.005
1
6mer
1256-1272
0.002
1
AP003774.6
hsa-miR-20b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457725
Biotype: lincRNA
Gene id: ENSG00000231680
Gene Name: AP003774.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
688-712
0.023
1
6mer
815-834
0.006
0
XLOC_010870
hsa-miR-20b-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023015
Biotype: transcript isomorph
Gene id: XLOC_010870
Gene Name: XLOC_010870
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
961-985
0.014
1
7mer
310-328
0.008
1
9mer
483-507
0.007
0
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