LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
AC012361.1
hsa-miR-20b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447260
Biotype: lincRNA
Gene id: ENSG00000236436
Gene Name: AC012361.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1346-1369
0.025
4
6mer
863-867
0.004
0
XLOC_004805
hsa-miR-20b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010927
Biotype: transcript isomorph
Gene id: XLOC_004805
Gene Name: XLOC_004805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-932
0.029
1
STARD13-AS
hsa-miR-20b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607944
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.029
4
XLOC_014420
hsa-miR-20b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029355
Biotype: transcript isomorph
Gene id: XLOC_014420
Gene Name: XLOC_014420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
537-557
0.014
0
6mer
1633-1646
0.007
4
7mer
1197-1221
0.004
0
6mer
815-834
0.004
1
RP4-647J21.1
hsa-miR-20b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000568457
Biotype: sense_overlapping
Gene id: ENSG00000260997
Gene Name: RP4-647J21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1713-1733
0.011
1
9mer
910-930
0.007
1
7mer
980-997
0.007
1
7mer
738-754
0.004
1
AC000036.4
hsa-miR-20b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000449652
Biotype: antisense
Gene id: ENSG00000225929
Gene Name: AC000036.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
543-563
0.014
0
6mer
1639-1652
0.007
4
7mer
1203-1227
0.004
0
6mer
821-840
0.003
1
STARD13-AS
hsa-miR-20b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609108
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.029
4
XLOC_013981
hsa-miR-20b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028752
Biotype: transcript isomorph
Gene id: XLOC_013981
Gene Name: XLOC_013981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9284-9302
0.021
1
6mer
546-570
0.003
0
6mer
1124-1137
0.002
0
6mer
7725-7748
0.002
1
6mer
7540-7563
0.001
0
RP11-415D17.3
hsa-miR-20b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000588761
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-534
0.029
9
RP11-702F3.1
hsa-miR-20b-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528480
Biotype: lincRNA
Gene id: ENSG00000254653
Gene Name: RP11-702F3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
276-297
0.019
4
9mer
120-144
0.010
1
XLOC_009233
hsa-miR-20b-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019409
Biotype: transcript isomorph
Gene id: XLOC_009233
Gene Name: XLOC_009233
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
297-321
0.007
1
9mer
1754-1778
0.006
0
7mer
2403-2428
0.006
0
6mer
220-241
0.004
1
6mer
579-605
0.004
0
6mer
639-665
0.002
2
RP11-344E13.3
hsa-miR-20b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584433
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
374-391
0.029
0
RP5-965G21.4
hsa-miR-20b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618303
Biotype: lincRNA
Gene id: ENSG00000274414
Gene Name: RP5-965G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1685-1699
0.023
Not Conserved
6mer
1047-1061
0.006
2
XLOC_008100
hsa-miR-20b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017281
Biotype: transcript isomorph
Gene id: XLOC_008100
Gene Name: XLOC_008100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
161-184
0.018
2
8mer
470-493
0.011
0
STARD13-AS
hsa-miR-20b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609995
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.029
4
RP11-99H8.1
hsa-miR-20b-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423187
Biotype: lincRNA
Gene id: ENSG00000226208
Gene Name: RP11-99H8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-96
0.017
1
9mer
311-335
0.012
1
XLOC_012444
hsa-miR-20b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025612
Biotype: transcript isomorph
Gene id: XLOC_012444
Gene Name: XLOC_012444
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
558-578
0.021
1
9mer
1078-1102
0.008
1
RP11-416O18.2
hsa-miR-20b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462382
Biotype: lincRNA
Gene id: ENSG00000240478
Gene Name: RP11-416O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
175-191
0.029
5
TMEM256-PLSCR3
hsa-miR-20b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037719.1
Biotype: sense
Gene id: NR_037719.1 (gene)
Gene Name: TMEM256-PLSCR3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-222
0.012
3
6mer
22-40
0.010
7
6mer
785-806
0.004
6
6mer
403-419
0.003
1
RP11-529E10.7
hsa-miR-20b-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000602543
Biotype: lincRNA
Gene id: ENSG00000270090
Gene Name: RP11-529E10.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
190-210
0.029
0
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