LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_012676
hsa-miR-20b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026329
Biotype: transcript isomorph
Gene id: XLOC_012676
Gene Name: XLOC_012676
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-239
0.020
1
7mer
308-334
0.010
1
RP4-665J23.1
hsa-miR-20b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606660
Biotype: retained_intron
Gene id: ENSG00000233593
Gene Name: RP4-665J23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-178
0.027
2
6mer
981-1003
0.003
1
AC096669.1
hsa-miR-20b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422203
Biotype: lincRNA
Gene id: ENSG00000225588
Gene Name: AC096669.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
553-577
0.030
0
STARD13-AS
hsa-miR-20b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608205
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-54
0.030
4
RP11-206L10.3
hsa-miR-20b-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3887-3898
0.014
0
9mer
86-106
0.009
Not Conserved
6mer
3814-3839
0.007
0
STARD13-AS
hsa-miR-20b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609167
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-50
0.030
4
TMEM108-AS1
hsa-miR-20b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000505721
Biotype: antisense
Gene id: ENSG00000251011
Gene Name: TMEM108-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2180-2204
0.021
0
6mer
67-89
0.004
2
6mer
978-1000
0.004
1
ATP1A1OS
hsa-miR-20b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027646.1
Biotype: antisense
Gene id: NR_027646.1 (gene)
Gene Name: ATP1A1OS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-52
0.030
4
XLOC_006293
hsa-miR-20b-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012895
Biotype: transcript isomorph
Gene id: XLOC_006293
Gene Name: XLOC_006293
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1706-1728
0.009
1
6mer
51-64
0.008
1
6mer
2360-2371
0.006
2
6mer
378-393
0.004
1
6mer
747-768
0.002
0
RP11-379B18.5
hsa-miR-20b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601985
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-101
0.019
0
6mer
60-82
0.011
3
LINC01498
hsa-miR-20b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502160
Biotype: antisense
Gene id: ENSG00000247213
Gene Name: LINC01498
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2668-2689
0.018
1
7mer
52-72
0.009
0
6mer
651-675
0.003
1
CTD-2130F23.1
hsa-miR-20b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506429
Biotype: lincRNA
Gene id: ENSG00000248533
Gene Name: CTD-2130F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-43
0.029
0
XLOC_011943
hsa-miR-20b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024234
Biotype: transcript isomorph
Gene id: XLOC_011943
Gene Name: XLOC_011943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
880-904
0.029
1
RP11-379B18.5
hsa-miR-20b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599350
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-101
0.019
0
6mer
60-82
0.010
3
XLOC_000951
hsa-miR-20b-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001623
Biotype: transcript isomorph
Gene id: XLOC_000951
Gene Name: XLOC_000951
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
198-218
0.029
2
AP006285.6
hsa-miR-20b-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000436539
Biotype: lincRNA
Gene id: ENSG00000227306
Gene Name: AP006285.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-292
0.018
1
7mer
369-396
0.012
1
RP11-626G11.5
hsa-miR-20b-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576433
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-235
0.029
4
STARD13-AS
hsa-miR-20b-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609137
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-72
0.029
4
RP11-90D4.3
hsa-miR-20b-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535746
Biotype: lincRNA
Gene id: ENSG00000256101
Gene Name: RP11-90D4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-518
0.019
0
6mer
522-544
0.010
2
CTD-3064H18.4
hsa-miR-20b-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000316807
Biotype: antisense
Gene id: ENSG00000180458
Gene Name: CTD-3064H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
67-81
0.014
1
6mer
325-344
0.010
1
6mer
2569-2589
0.006
1
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