LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
PCAT5
hsa-miR-20b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_110138.1
Biotype: lincRNA
Gene id: NR_110138.1 (gene)
Gene Name: PCAT5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-167
0.014
0
9mer
945-969
0.010
1
7mer
427-443
0.004
2
6mer
2433-2455
0.001
0
XLOC_003242
hsa-miR-20b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006651
Biotype: transcript isomorph
Gene id: XLOC_003242
Gene Name: XLOC_003242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-25
0.025
1
6mer
208-230
0.005
0
STARD13-AS
hsa-miR-20b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608803
Biotype: retained_intron
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
XLOC_001265
hsa-miR-20b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001882
Biotype: transcript isomorph
Gene id: XLOC_001265
Gene Name: XLOC_001265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4899-4923
0.015
0
7mer
398-415
0.007
1
6mer
3326-3352
0.004
8
6mer
1886-1911
0.003
2
LOC101929154
hsa-miR-20b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105012.1
Biotype: lincRNA
Gene id: NR_105012.1 (gene)
Gene Name: LOC101929154
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-294
0.030
0
XLOC_004767
hsa-miR-20b-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010294
Biotype: transcript isomorph
Gene id: XLOC_004767
Gene Name: XLOC_004767
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
117-136
0.030
0
STARD13-AS
hsa-miR-20b-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608060
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
AC010745.2
hsa-miR-20b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420404
Biotype: lincRNA
Gene id: ENSG00000228876
Gene Name: AC010745.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
688-713
0.030
1
AC090587.2
hsa-miR-20b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000507938
Biotype: sense_overlapping
Gene id: ENSG00000250404
Gene Name: AC090587.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
734-757
0.009
9
9mer
2434-2458
0.007
1
9mer
1349-1369
0.006
1
6mer
680-704
0.004
8
6mer
529-547
0.003
3
XLOC_006249
hsa-miR-20b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013590
Biotype: transcript isomorph
Gene id: XLOC_006249
Gene Name: XLOC_006249
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
179-203
0.024
1
6mer
132-148
0.006
1
AL133243.2
hsa-miR-20b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617415
Biotype: sense_intronic
Gene id: ENSG00000276517
Gene Name: AL133243.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2921-2943
0.009
2
6mer
2971-2990
0.008
1
7mer
720-742
0.006
0
6mer
944-948
0.003
0
6mer
1126-1147
0.002
1
6mer
1248-1269
0.002
1
STARD13-AS
hsa-miR-20b-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609233
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-89
0.030
4
STARD13-AS
hsa-miR-20b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608175
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-49
0.030
4
RP11-672L10.1
hsa-miR-20b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564872
Biotype: lincRNA
Gene id: ENSG00000259837
Gene Name: RP11-672L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-61
0.030
1
RP11-643A5.2
hsa-miR-20b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558920
Biotype: lincRNA
Gene id: ENSG00000259669
Gene Name: RP11-643A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-24
0.023
2
6mer
41-59
0.007
1
XLOC_009855
hsa-miR-20b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020235
Biotype: transcript isomorph
Gene id: XLOC_009855
Gene Name: XLOC_009855
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
914-936
0.023
1
6mer
276-302
0.007
0
RP11-774O3.3
hsa-miR-20b-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505448
Biotype: lincRNA
Gene id: ENSG00000251615
Gene Name: RP11-774O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3042-3062
0.007
1
6mer
195-212
0.006
1
6mer
502-520
0.005
0
6mer
2156-2177
0.001
Not Conserved
6mer
1550-1560
0.001
1
6mer
2065-2089
0.001
0
6mer
1805-1825
0.001
0
6mer
2014-2038
0.001
0
6mer
1499-1509
0.001
1
6mer
1963-1984
0.001
0
6mer
1652-1673
0.001
1
6mer
1754-1764
0.001
1
6mer
1703-1727
0.001
0
RP11-680F20.11
hsa-miR-20b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000583165
Biotype: lincRNA
Gene id: ENSG00000263906
Gene Name: RP11-680F20.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1372-1397
0.026
0
6mer
1226-1252
0.003
0
RP11-379B18.5
hsa-miR-20b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594843
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-82
0.019
0
6mer
41-63
0.010
3
RP4-665J23.1
hsa-miR-20b-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455680
Biotype: retained_intron
Gene id: ENSG00000233593
Gene Name: RP4-665J23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-178
0.027
2
6mer
981-1003
0.003
1
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