LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
CASC16
hsa-miR-20b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000510238
Biotype: lincRNA
Gene id: ENSG00000249231
Gene Name: CASC16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-728
0.030
1
STARD13-AS
hsa-miR-20b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609608
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
XLOC_002770
hsa-miR-20b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006165
Biotype: transcript isomorph
Gene id: XLOC_002770
Gene Name: XLOC_002770
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
706-731
0.030
5
STARD13-AS
hsa-miR-20b-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000610218
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
HCG18
hsa-miR-20b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426882
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-113
0.021
1
6mer
4202-4223
0.004
4
6mer
1039-1062
0.003
2
6mer
1304-1308
0.002
0
6mer
1847-1872
0.001
1
RP11-175O19.4
hsa-miR-20b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3181-3208
0.017
10
6mer
975-1001
0.008
7
6mer
1971-1985
0.003
5
6mer
427-448
0.002
0
STARD13-AS
hsa-miR-20b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609335
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
CTD-2313F11.1
hsa-miR-20b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000608929
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
282-300
0.030
1
STARD13-AS
hsa-miR-20b-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609536
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
CTA-243E7.4
hsa-miR-20b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623888
Biotype: antisense
Gene id: ENSG00000279085
Gene Name: CTA-243E7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
160-184
0.008
1
9mer
4846-4866
0.007
1
9mer
757-777
0.007
1
9mer
1725-1745
0.003
1
7mer
2849-2873
0.002
0
9mer
2213-2232
0.002
1
6mer
2275-2297
0.001
0
LOC101929154
hsa-miR-20b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105013.1
Biotype: lincRNA
Gene id: NR_105013.1 (gene)
Gene Name: LOC101929154
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-187
0.030
0
RP11-588H23.3
hsa-miR-20b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548924
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-556
0.030
1
STARD13-AS
hsa-miR-20b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609063
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
XLOC_009632
hsa-miR-20b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020287
Biotype: transcript isomorph
Gene id: XLOC_009632
Gene Name: XLOC_009632
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-58
0.017
1
7mer
849-870
0.013
1
RP11-358N2.2
hsa-miR-20b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000612444
Biotype: lincRNA
Gene id: ENSG00000277692
Gene Name: RP11-358N2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-236
0.030
1
RP11-755B10.3
hsa-miR-20b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465933
Biotype: lincRNA
Gene id: ENSG00000241933
Gene Name: RP11-755B10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2664-2688
0.013
0
7mer
2878-2900
0.008
0
9mer
2365-2387
0.005
0
6mer
2137-2152
0.003
2
CCDC39-AS1
hsa-miR-20b-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000495357
Biotype: antisense
Gene id: ENSG00000243187
Gene Name: CCDC39-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-161
0.030
6
RP11-145G20.1
hsa-miR-20b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000522173
Biotype: lincRNA
Gene id: ENSG00000248510
Gene Name: RP11-145G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-165
0.019
4
6mer
526-549
0.004
1
6mer
372-387
0.004
Not Conserved
6mer
624-648
0.003
1
STARD13-AS
hsa-miR-20b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607935
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
STARD13-AS
hsa-miR-20b-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609343
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-31
0.030
4
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