LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
RP11-327L9.1
hsa-miR-20b-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000622930
Biotype: lincRNA
Gene id: ENSG00000280366
Gene Name: RP11-327L9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-399
0.023
7
7mer
483-496
0.009
2
XLOC_002585
hsa-miR-20b-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5724-5745
0.012
3
6mer
6000-6016
0.007
4
9mer
718-738
0.006
1
6mer
4288-4308
0.003
1
6mer
2069-2091
0.002
2
6mer
4838-4858
0.002
1
XLOC_002798
hsa-miR-20b-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006203
Biotype: transcript isomorph
Gene id: XLOC_002798
Gene Name: XLOC_002798
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
646-661
0.025
1
6mer
522-548
0.007
1
RP11-90D4.3
hsa-miR-20b-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539795
Biotype: lincRNA
Gene id: ENSG00000256101
Gene Name: RP11-90D4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-517
0.021
0
6mer
521-543
0.011
2
RP11-415D17.3
hsa-miR-20b-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000440220
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-252
0.031
9
RP11-415D17.3
hsa-miR-20b-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591821
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-226
0.031
9
XLOC_007324
hsa-miR-20b-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015947
Biotype: transcript isomorph
Gene id: XLOC_007324
Gene Name: XLOC_007324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1682-1695
0.031
1
CTC-546K23.1
hsa-miR-20b-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000594690
Biotype: lincRNA
Gene id: ENSG00000229855
Gene Name: CTC-546K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
498-517
0.019
4
6mer
589-616
0.007
3
6mer
454-469
0.005
0
RP4-717I23.3
hsa-miR-20b-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451302
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
531-551
0.017
3
7mer
83-103
0.014
8
XLOC_002897
hsa-miR-20b-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006290
Biotype: transcript isomorph
Gene id: XLOC_002897
Gene Name: XLOC_002897
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-562
0.026
0
6mer
1399-1416
0.005
0
RP11-347L18.1
hsa-miR-20b-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434356
Biotype: lincRNA
Gene id: ENSG00000226739
Gene Name: RP11-347L18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-326
0.031
0
RP11-390E23.6
hsa-miR-20b-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000607957
Biotype: antisense
Gene id: ENSG00000272686
Gene Name: RP11-390E23.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1019-1043
0.014
2
7mer
935-952
0.007
1
6mer
507-529
0.005
5
6mer
1494-1512
0.004
3
FAM182A
hsa-miR-20b-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000376398
Biotype: lincRNA
Gene id: ENSG00000125804
Gene Name: FAM182A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-62
0.023
1
7mer
4682-4709
0.006
0
7mer
1884-1899
0.002
Not Conserved
6mer
2107-2131
0.001
Not Conserved
CTA-243E7.1
hsa-miR-20b-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
855-879
0.008
1
9mer
12200-12224
0.006
1
6mer
309-327
0.005
1
9mer
5780-5800
0.004
1
8mer
4007-4027
0.003
1
9mer
8321-8345
0.002
0
6mer
11071-11096
0.002
0
6mer
7773-7796
0.001
1
LOC401324
hsa-miR-20b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_038864.1
Biotype: lincRNA
Gene id: NR_038864.1 (gene)
Gene Name: LOC401324
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
324-340
0.023
0
7mer
2136-2153
0.005
8
6mer
2697-2721
0.003
1
XLOC_012598
hsa-miR-20b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026224
Biotype: transcript isomorph
Gene id: XLOC_012598
Gene Name: XLOC_012598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1905-1925
0.017
0
7mer
1280-1303
0.008
Not Conserved
7mer
1024-1047
0.005
Not Conserved
RP11-510M2.2
hsa-miR-20b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000500612
Biotype: antisense
Gene id: ENSG00000247324
Gene Name: RP11-510M2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2526-2553
0.022
1
9mer
1748-1772
0.005
1
6mer
562-587
0.004
1
AC005154.6
hsa-miR-20b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7995-8016
0.004
1
7mer
13808-13828
0.004
0
9mer
11878-11902
0.003
1
6mer
3903-3927
0.003
2
7mer
2612-2635
0.003
1
6mer
9707-9725
0.003
1
7mer
7088-7100
0.002
1
6mer
4327-4346
0.002
0
9mer
12161-12185
0.002
1
6mer
12248-12271
0.002
1
6mer
10065-10089
0.002
0
6mer
3844-3856
0.001
0
6mer
7958-7976
0.001
1
6mer
4207-4225
0.001
0
RP3-402G11.25
hsa-miR-20b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000607943
Biotype: antisense
Gene id: ENSG00000273188
Gene Name: RP3-402G11.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
300-324
0.019
1
7mer
128-148
0.012
0
RP11-116O18.1
hsa-miR-20b-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590535
Biotype: sense_intronic
Gene id: ENSG00000266968
Gene Name: RP11-116O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
993-1009
0.011
1
6mer
1750-1777
0.009
1
6mer
1627-1646
0.008
1
6mer
917-935
0.003
0
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