LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
RP11-576N17.5
hsa-miR-20b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515670
Biotype: lincRNA
Gene id: ENSG00000250057
Gene Name: RP11-576N17.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
118-138
0.033
1
CKMT2-AS1
hsa-miR-20b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502041
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
461-481
0.018
1
9mer
849-862
0.015
0
XLOC_004502
hsa-miR-20b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010054
Biotype: transcript isomorph
Gene id: XLOC_004502
Gene Name: XLOC_004502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-370
0.033
1
XLOC_008087
hsa-miR-20b-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017273
Biotype: transcript isomorph
Gene id: XLOC_008087
Gene Name: XLOC_008087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-164
0.033
1
GAS5-AS1
hsa-miR-20b-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602767
Biotype: antisense
Gene id: ENSG00000270084
Gene Name: GAS5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
473-486
0.028
1
6mer
204-229
0.005
1
RP11-232C2.3
hsa-miR-20b-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555954
Biotype: antisense
Gene id: ENSG00000258719
Gene Name: RP11-232C2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
71-91
0.030
2
6mer
391-413
0.003
Not Conserved
XLOC_012887
hsa-miR-20b-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026214
Biotype: transcript isomorph
Gene id: XLOC_012887
Gene Name: XLOC_012887
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
663-685
0.032
1
RP11-466A19.1
hsa-miR-20b-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581360
Biotype: antisense
Gene id: ENSG00000266718
Gene Name: RP11-466A19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1784-1800
0.016
1
8mer
2084-2108
0.009
1
7mer
546-567
0.006
1
XLOC_003380
hsa-miR-20b-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006740
Biotype: transcript isomorph
Gene id: XLOC_003380
Gene Name: XLOC_003380
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2077-2093
0.032
1
RP11-704C2.1
hsa-miR-20b-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564156
Biotype: lincRNA
Gene id: ENSG00000261194
Gene Name: RP11-704C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-689
0.032
1
XLOC_005050
hsa-miR-20b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010530
Biotype: transcript isomorph
Gene id: XLOC_005050
Gene Name: XLOC_005050
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-144
0.032
1
CTD-2313F11.1
hsa-miR-20b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000618221
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-260
0.032
1
AP000479.1
hsa-miR-20b-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526436
Biotype: lincRNA
Gene id: ENSG00000255433
Gene Name: AP000479.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1204-1227
0.029
1
6mer
1518-1536
0.002
0
6mer
1589-1607
0.002
1
AL136419.6
hsa-miR-20b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000528804
Biotype: retained_intron
Gene id: ENSG00000260669
Gene Name: AL136419.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1759-1786
0.016
7
9mer
89-113
0.007
0
6mer
309-328
0.004
1
7mer
222-246
0.004
1
6mer
1052-1076
0.002
1
XLOC_007207
hsa-miR-20b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015162
Biotype: transcript isomorph
Gene id: XLOC_007207
Gene Name: XLOC_007207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-106
0.032
1
RP11-701P16.2
hsa-miR-20b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508020
Biotype: antisense
Gene id: ENSG00000251139
Gene Name: RP11-701P16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
576-593
0.028
3
7mer
201-225
0.005
0
RP11-557H15.3
hsa-miR-20b-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422736
Biotype: lincRNA
Gene id: ENSG00000231971
Gene Name: RP11-557H15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-309
0.026
3
6mer
80-101
0.007
3
XLOC_009515
hsa-miR-20b-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019718
Biotype: transcript isomorph
Gene id: XLOC_009515
Gene Name: XLOC_009515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-68
0.023
2
7mer
415-440
0.009
0
XLOC_005413
hsa-miR-20b-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011912
Biotype: transcript isomorph
Gene id: XLOC_005413
Gene Name: XLOC_005413
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-425
0.032
0
AL109763.1
hsa-miR-20b-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455391
Biotype: sense_overlapping
Gene id: ENSG00000228708
Gene Name: AL109763.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-369
0.028
0
7mer
361-376
0.004
0
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