LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
PCAT19
hsa-miR-20b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1178-1198
0.021
1
6mer
1908-1929
0.006
1
6mer
2130-2156
0.006
1
LINC00948
hsa-miR-20b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414264
Biotype: lincRNA
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-308
0.018
6
6mer
358-372
0.015
8
XLOC_008737
hsa-miR-20b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018445
Biotype: transcript isomorph
Gene id: XLOC_008737
Gene Name: XLOC_008737
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1473-1497
0.011
1
9mer
2446-2466
0.010
1
6mer
1955-1968
0.005
2
6mer
245-264
0.004
0
9mer
1327-1347
0.003
1
ZFPM2-AS1
hsa-miR-20b-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520433
Biotype: antisense
Gene id: ENSG00000251003
Gene Name: ZFPM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-354
0.027
1
6mer
569-581
0.006
1
C12orf36
hsa-miR-20b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318426
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1992-2010
0.030
2
6mer
1971-1991
0.002
Not Conserved
6mer
1844-1870
0.002
0
MGC27345
hsa-miR-20b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9380-9399
0.009
1
9mer
7899-7919
0.007
0
7mer
7697-7712
0.005
3
7mer
2529-2542
0.004
1
6mer
8830-8849
0.003
3
6mer
9166-9189
0.002
1
6mer
5508-5534
0.002
1
6mer
3695-3718
0.001
1
LAMTOR5-AS1
hsa-miR-20b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444238
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-425
0.014
1
8mer
556-572
0.014
0
6mer
329-350
0.004
1
RP11-522B15.3
hsa-miR-20b-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558499
Biotype: lincRNA
Gene id: ENSG00000259275
Gene Name: RP11-522B15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4188-4202
0.014
1
8mer
3498-3525
0.011
0
6mer
3748-3771
0.004
3
6mer
1551-1566
0.003
4
6mer
2991-3015
0.002
0
RP11-336K24.12
hsa-miR-20b-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610146
Biotype: antisense
Gene id: ENSG00000273002
Gene Name: RP11-336K24.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1677-1694
0.021
3
8mer
2003-2027
0.012
1
XLOC_002759
hsa-miR-20b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006930
Biotype: transcript isomorph
Gene id: XLOC_002759
Gene Name: XLOC_002759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6499-6519
0.008
1
6mer
195-213
0.008
3
6mer
5612-5629
0.004
1
6mer
6402-6425
0.003
0
6mer
5811-5831
0.003
1
6mer
4974-4988
0.003
2
6mer
5284-5306
0.002
1
7mer
3749-3763
0.002
0
6mer
4187-4208
0.001
1
SENCR
hsa-miR-20b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526269
Biotype: antisense
Gene id: ENSG00000254703
Gene Name: SENCR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-241
0.020
3
6mer
555-574
0.008
6
6mer
1259-1283
0.005
1
RP11-429B14.1
hsa-miR-20b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559041
Biotype: sense_overlapping
Gene id: ENSG00000259713
Gene Name: RP11-429B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-479
0.033
1
SUCLG2-AS1
hsa-miR-20b-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482677
Biotype: lincRNA
Gene id: ENSG00000241316
Gene Name: SUCLG2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
758-779
0.020
0
7mer
38-57
0.005
0
9mer
1602-1626
0.005
0
6mer
1439-1461
0.003
1
RP11-87E22.2
hsa-miR-20b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000511897
Biotype: antisense
Gene id: ENSG00000248738
Gene Name: RP11-87E22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3640-3660
0.026
0
7mer
2472-2488
0.007
2
XLOC_001199
hsa-miR-20b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001815
Biotype: transcript isomorph
Gene id: XLOC_001199
Gene Name: XLOC_001199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1139-1162
0.014
1
8mer
2472-2491
0.009
1
7mer
4827-4849
0.005
1
6mer
1204-1224
0.002
1
6mer
4201-4223
0.001
0
6mer
2442-2465
0.001
3
RP4-545C24.1
hsa-miR-20b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000460955
Biotype: antisense
Gene id: ENSG00000244198
Gene Name: RP4-545C24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
540-556
0.033
1
RP11-932O9.10
hsa-miR-20b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602684
Biotype: lincRNA
Gene id: ENSG00000269974
Gene Name: RP11-932O9.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
199-203
0.015
0
6mer
123-144
0.014
0
6mer
115-128
0.004
Not Conserved
XLOC_005332
hsa-miR-20b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011845
Biotype: transcript isomorph
Gene id: XLOC_005332
Gene Name: XLOC_005332
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-186
0.017
1
7mer
1094-1120
0.012
0
6mer
74-100
0.004
0
XLOC_013866
hsa-miR-20b-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028969
Biotype: transcript isomorph
Gene id: XLOC_013866
Gene Name: XLOC_013866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2568-2587
0.010
Not Conserved
6mer
4177-4195
0.007
1
6mer
520-539
0.005
1
6mer
2871-2895
0.003
3
6mer
53-72
0.003
0
6mer
692-717
0.003
1
6mer
665-688
0.002
2
XLOC_009255
hsa-miR-20b-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019107
Biotype: transcript isomorph
Gene id: XLOC_009255
Gene Name: XLOC_009255
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1932-1956
0.020
0
9mer
1559-1583
0.008
1
6mer
1888-1911
0.005
2
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