LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-20b-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
AC124861.1
hsa-miR-20b-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457178
Biotype: lincRNA
Gene id: ENSG00000227479
Gene Name: AC124861.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-420
0.034
2
FLJ16171
hsa-miR-20b-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000377300
Biotype: lincRNA
Gene id: ENSG00000204754
Gene Name: FLJ16171
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
169-188
0.007
1
6mer
1686-1712
0.006
1
6mer
9-25
0.006
0
6mer
303-314
0.004
0
6mer
1047-1073
0.004
1
6mer
518-541
0.003
1
6mer
707-721
0.003
1
PCAT19
hsa-miR-20b-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598215
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
48-69
0.021
1
6mer
270-296
0.013
1
RP11-712B9.2
hsa-miR-20b-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501356
Biotype: antisense
Gene id: ENSG00000245552
Gene Name: RP11-712B9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1808-1832
0.020
0
9mer
1435-1459
0.008
1
6mer
1764-1787
0.005
2
SNHG14
hsa-miR-20b-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557108
Biotype: retained_intron
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-151
0.015
1
9mer
2954-2973
0.008
0
8mer
1579-1594
0.004
2
6mer
1533-1558
0.004
3
8mer
2553-2573
0.003
0
LYST-AS1
hsa-miR-20b-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412098
Biotype: antisense
Gene id: ENSG00000229463
Gene Name: LYST-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
431-455
0.016
4
9mer
45-69
0.011
0
6mer
280-306
0.007
3
STARD13-IT1
hsa-miR-20b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456087
Biotype: sense_intronic
Gene id: ENSG00000230300
Gene Name: STARD13-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-172
0.026
2
6mer
142-157
0.008
4
RP11-643A5.2
hsa-miR-20b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557976
Biotype: lincRNA
Gene id: ENSG00000259669
Gene Name: RP11-643A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-84
0.018
2
6mer
101-119
0.007
1
6mer
601-627
0.005
0
6mer
984-1010
0.004
Not Conserved
RP11-2H8.2
hsa-miR-20b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552780
Biotype: lincRNA
Gene id: ENSG00000257410
Gene Name: RP11-2H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
149-176
0.015
1
7mer
1156-1177
0.015
1
6mer
775-794
0.003
1
SNHG16
hsa-miR-20b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587838
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
663-680
0.034
1
XLOC_013995
hsa-miR-20b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-594
0.016
0
7mer
665-670
0.008
0
6mer
163-181
0.008
0
6mer
2204-2226
0.001
Not Conserved
XLOC_012630
hsa-miR-20b-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026287
Biotype: transcript isomorph
Gene id: XLOC_012630
Gene Name: XLOC_012630
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1362-1382
0.010
0
6mer
1949-1968
0.008
0
6mer
498-513
0.008
0
6mer
807-829
0.006
0
6mer
1002-1010
0.002
Not Conserved
C1orf132
hsa-miR-20b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7917-7935
0.005
1
7mer
1354-1369
0.005
1
7mer
12712-12730
0.004
2
7mer
8934-8958
0.004
0
6mer
6601-6621
0.003
6
6mer
11393-11417
0.002
0
6mer
6759-6783
0.002
3
6mer
12402-12425
0.002
3
6mer
7141-7162
0.002
0
6mer
10381-10405
0.002
2
6mer
7758-7769
0.001
1
6mer
5586-5607
0.001
2
6mer
4860-4885
0.001
1
NEAT1
hsa-miR-20b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
19819-19842
0.007
1
7mer
9070-9083
0.004
0
7mer
10035-10061
0.003
1
6mer
18811-18834
0.002
0
6mer
15762-15785
0.002
1
9mer
16619-16643
0.002
0
6mer
3666-3685
0.002
0
6mer
16526-16547
0.002
1
6mer
14885-14901
0.002
0
6mer
16395-16420
0.002
2
6mer
10515-10531
0.002
0
6mer
13250-13275
0.001
0
6mer
18205-18227
0.001
1
6mer
4424-4446
0.001
0
6mer
3776-3794
0.001
0
6mer
18226-18250
0.001
1
RP11-242C19.2
hsa-miR-20b-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000497961
Biotype: sense_intronic
Gene id: ENSG00000241886
Gene Name: RP11-242C19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-476
0.027
0
6mer
103-129
0.006
2
XLOC_003546
hsa-miR-20b-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007535
Biotype: transcript isomorph
Gene id: XLOC_003546
Gene Name: XLOC_003546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2545-2562
0.009
Not Conserved
6mer
54-74
0.009
4
6mer
577-603
0.007
3
6mer
2829-2847
0.004
1
6mer
903-920
0.003
1
6mer
1131-1155
0.002
1
SNHG24
hsa-miR-20b-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554693
Biotype: lincRNA
Gene id: ENSG00000271417
Gene Name: SNHG24
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
881-900
0.018
1
7mer
712-729
0.016
0
XLOC_006934
hsa-miR-20b-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014865
Biotype: transcript isomorph
Gene id: XLOC_006934
Gene Name: XLOC_006934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3808-3828
0.011
0
6mer
578-600
0.006
1
7mer
3312-3336
0.004
1
6mer
2462-2487
0.003
1
6mer
3443-3467
0.002
1
6mer
1351-1367
0.002
0
6mer
2279-2296
0.002
0
6mer
2827-2851
0.002
1
6mer
3102-3126
0.002
1
RP11-173A16.2
hsa-miR-20b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588561
Biotype: sense_intronic
Gene id: ENSG00000266900
Gene Name: RP11-173A16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1404-1423
0.022
1
7mer
831-847
0.011
1
RP11-404F10.2
hsa-miR-20b-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443928
Biotype: antisense
Gene id: ENSG00000228863
Gene Name: RP11-404F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1042-1066
0.014
5
6mer
1026-1052
0.012
4
6mer
122-141
0.007
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept