LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
RP11-29G8.3
hsa-miR-20b-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000563635
Biotype: processed_transcript
Gene id: ENSG00000261553
Gene Name: RP11-29G8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-387
0.026
5
9mer
3862-3886
0.007
1
6mer
2317-2339
0.002
2
6mer
2379-2406
0.001
2
RP11-626G11.5
hsa-miR-20b-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567047
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-127
0.036
4
CTC-369A16.3
hsa-miR-20b-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510853
Biotype: lincRNA
Gene id: ENSG00000251662
Gene Name: CTC-369A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-116
0.029
5
6mer
548-565
0.007
1
AC114776.3
hsa-miR-20b-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
53-77
0.017
0
6mer
3571-3588
0.010
1
9mer
1060-1084
0.008
0
RNF144A-AS1
hsa-miR-20b-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000424351
Biotype: retained_intron
Gene id: ENSG00000228203
Gene Name: RNF144A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1427-1445
0.015
4
9mer
243-263
0.008
1
6mer
2714-2725
0.005
2
9mer
1874-1898
0.005
0
6mer
809-831
0.003
Not Conserved
PWRN2
hsa-miR-20b-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566245
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
9-33
0.018
1
6mer
455-471
0.018
1
RP11-451G4.2
hsa-miR-20b-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489090
Biotype: lincRNA
Gene id: ENSG00000240045
Gene Name: RP11-451G4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
259-279
0.018
1
6mer
514-533
0.009
5
8mer
485-508
0.009
0
XLOC_005392
hsa-miR-20b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011181
Biotype: transcript isomorph
Gene id: XLOC_005392
Gene Name: XLOC_005392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8601-8625
0.021
0
6mer
103-128
0.005
1
6mer
291-299
0.004
0
6mer
4128-4153
0.002
0
6mer
1580-1606
0.001
0
6mer
1244-1267
0.001
1
6mer
7880-7897
0.001
0
RP11-178C3.2
hsa-miR-20b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586209
Biotype: lincRNA
Gene id: ENSG00000267302
Gene Name: RP11-178C3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-291
0.020
5
7mer
716-738
0.007
3
6mer
565-586
0.006
7
6mer
485-511
0.003
0
RP11-756H6.1
hsa-miR-20b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547552
Biotype: lincRNA
Gene id: ENSG00000258001
Gene Name: RP11-756H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-235
0.036
2
XLOC_001751
hsa-miR-20b-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003048
Biotype: transcript isomorph
Gene id: XLOC_001751
Gene Name: XLOC_001751
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1878-1902
0.014
0
6mer
342-369
0.012
1
6mer
804-828
0.010
1
SNHG14
hsa-miR-20b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8569-8593
0.011
1
7mer
3722-3746
0.008
1
6mer
8491-8511
0.005
1
6mer
7861-7881
0.003
1
6mer
5022-5048
0.002
1
6mer
4770-4793
0.002
1
6mer
4408-4423
0.002
1
6mer
6127-6151
0.001
1
6mer
6482-6499
0.001
0
6mer
6035-6060
0.001
1
RP4-547N15.3
hsa-miR-20b-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621423
Biotype: sense_intronic
Gene id: ENSG00000275678
Gene Name: RP4-547N15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
693-717
0.013
1
7mer
391-412
0.010
1
7mer
968-985
0.008
1
6mer
1656-1681
0.005
2
RP11-417L19.2
hsa-miR-20b-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542763
Biotype: lincRNA
Gene id: ENSG00000256955
Gene Name: RP11-417L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
565-584
0.036
1
XLOC_013753
hsa-miR-20b-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027891
Biotype: transcript isomorph
Gene id: XLOC_013753
Gene Name: XLOC_013753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
989-1009
0.020
1
8mer
492-515
0.008
1
6mer
39-63
0.007
1
RP11-303E16.2
hsa-miR-20b-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566639
Biotype: sense_intronic
Gene id: ENSG00000261061
Gene Name: RP11-303E16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-33
0.030
0
7mer
307-319
0.006
Not Conserved
STK4-AS1
hsa-miR-20b-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000434401
Biotype: lincRNA
Gene id: ENSG00000227477
Gene Name: STK4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
995-1015
0.020
1
8mer
498-521
0.008
1
6mer
45-69
0.007
1
RP11-218I7.2
hsa-miR-20b-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437881
Biotype: lincRNA
Gene id: ENSG00000228739
Gene Name: RP11-218I7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
341-358
0.035
1
RP11-611E13.2
hsa-miR-20b-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000553135
Biotype: antisense
Gene id: ENSG00000257815
Gene Name: RP11-611E13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-201
0.035
1
MAGI1-IT1
hsa-miR-20b-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460754
Biotype: sense_intronic
Gene id: ENSG00000272610
Gene Name: MAGI1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-382
0.029
6
6mer
589-606
0.004
1
6mer
1177-1195
0.003
1
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