LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010384
hsa-miR-20b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021786
Biotype: transcript isomorph
Gene id: XLOC_010384
Gene Name: XLOC_010384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-533
0.041
1
8mer
606-625
0.034
5
6mer
14-31
0.007
4
6mer
1027-1048
0.005
3
CTD-2015H6.3
hsa-miR-20b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508000
Biotype: antisense
Gene id: ENSG00000249042
Gene Name: CTD-2015H6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-492
0.058
2
9mer
837-857
0.012
1
7mer
339-363
0.010
1
6mer
92-110
0.008
1
XLOC_004823
hsa-miR-20b-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010335
Biotype: transcript isomorph
Gene id: XLOC_004823
Gene Name: XLOC_004823
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
763-788
0.060
2
8mer
580-598
0.027
1
CTA-221G9.11
hsa-miR-20b-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
848-872
0.063
0
7mer
154-174
0.023
0
RP3-323A16.1
hsa-miR-20b-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53939-53959
0.006
1
9mer
38888-38907
0.004
1
9mer
10831-10855
0.004
1
9mer
28235-28259
0.004
1
8mer
19372-19388
0.004
Not Conserved
9mer
36600-36619
0.004
1
8mer
44778-44797
0.004
0
7mer
10104-10119
0.004
0
6mer
20384-20398
0.003
3
9mer
3006-3024
0.003
1
7mer
40257-40277
0.003
1
7mer
40191-40213
0.003
1
6mer
14829-14845
0.003
2
7mer
42744-42763
0.003
1
6mer
25697-25715
0.002
1
6mer
53560-53586
0.002
0
7mer
47826-47849
0.002
0
6mer
18913-18936
0.002
1
7mer
1289-1310
0.002
Not Conserved
7mer
11782-11801
0.002
1
6mer
50512-50532
0.002
1
6mer
9820-9838
0.002
1
6mer
45992-46008
0.002
1
6mer
39886-39904
0.002
1
6mer
2037-2044
0.002
1
6mer
32855-32879
0.002
0
7mer
35236-35256
0.002
0
9mer
47950-47970
0.001
0
6mer
27072-27086
0.001
1
6mer
5848-5868
0.001
0
6mer
47094-47110
0.001
1
6mer
20161-20182
0.001
Not Conserved
6mer
40444-40460
0.001
1
7mer
11840-11862
0.001
1
6mer
19350-19376
0.001
Not Conserved
7mer
17537-17561
0.001
Not Conserved
XLOC_000199
hsa-miR-20b-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000200
Biotype: transcript isomorph
Gene id: XLOC_000199
Gene Name: XLOC_000199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1979-2003
0.059
1
6mer
953-976
0.015
1
6mer
598-624
0.010
1
XLOC_012755
hsa-miR-20b-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026408
Biotype: transcript isomorph
Gene id: XLOC_012755
Gene Name: XLOC_012755
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
35-55
0.066
0
6mer
284-308
0.017
0
XLOC_007765
hsa-miR-20b-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016396
Biotype: transcript isomorph
Gene id: XLOC_007765
Gene Name: XLOC_007765
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-197
0.067
1
6mer
322-340
0.015
1
XLOC_007290
hsa-miR-20b-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015925
Biotype: transcript isomorph
Gene id: XLOC_007290
Gene Name: XLOC_007290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1408-1431
0.075
4
6mer
1161-1185
0.006
3
RP11-374M1.2
hsa-miR-20b-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-176
0.081
1
PVRL3-AS1
hsa-miR-20b-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467426
Biotype: antisense
Gene id: ENSG00000242242
Gene Name: PVRL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
603-623
0.080
6
AC006548.28
hsa-miR-20b-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2339-2357
0.007
0
6mer
326-346
0.006
1
8mer
59328-59342
0.006
1
8mer
2177-2199
0.005
1
9mer
63298-63317
0.005
1
8mer
71556-71577
0.004
Not Conserved
6mer
112-129
0.004
1
9mer
81628-81648
0.003
1
9mer
66882-66906
0.003
Not Conserved
8mer
41577-41595
0.003
0
6mer
28257-28283
0.002
0
6mer
36097-36116
0.002
4
7mer
24819-24845
0.002
0
7mer
51927-51948
0.002
Not Conserved
6mer
41050-41069
0.002
1
6mer
73712-73734
0.002
1
6mer
16543-16560
0.002
1
6mer
55725-55744
0.002
0
6mer
15921-15944
0.002
3
6mer
59469-59493
0.002
1
6mer
72927-72953
0.002
0
6mer
67658-67684
0.002
0
6mer
16952-16965
0.001
0
6mer
68803-68818
0.001
0
6mer
55343-55358
0.001
0
6mer
51565-51585
0.001
Not Conserved
6mer
23289-23304
0.001
1
7mer
75137-75162
0.001
0
7mer
36841-36868
0.001
1
6mer
38121-38140
0.001
1
6mer
12105-12125
0.001
1
6mer
35981-36007
0.001
1
MIR6818
hsa-miR-20b-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
27872-27895
0.006
0
7mer
19534-19559
0.005
0
9mer
5130-5154
0.005
1
7mer
13653-13679
0.004
Not Conserved
8mer
32675-32694
0.004
1
6mer
9603-9628
0.004
13
6mer
15619-15643
0.003
5
9mer
18048-18067
0.003
1
9mer
11895-11915
0.003
1
9mer
4948-4972
0.003
1
9mer
10538-10558
0.003
0
6mer
5772-5788
0.003
3
6mer
2529-2533
0.003
4
6mer
33713-33733
0.003
5
6mer
18422-18447
0.002
1
6mer
15071-15087
0.002
1
6mer
23994-24013
0.002
5
6mer
24396-24417
0.002
1
6mer
42324-42343
0.002
1
6mer
15991-16011
0.002
1
6mer
6056-6081
0.002
0
7mer
4492-4516
0.002
1
6mer
16605-16620
0.002
0
6mer
7473-7492
0.002
0
6mer
9551-9570
0.001
8
6mer
20644-20670
0.001
1
7mer
46477-46495
0.001
0
6mer
46600-46622
0.001
1
6mer
34118-34138
0.001
0
6mer
32428-32440
0.001
0
6mer
47494-47518
0.001
2
6mer
20094-20114
0.001
1
LOC101929319
hsa-miR-20b-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110248.1
Biotype: antisense
Gene id: NR_110248.1 (gene)
Gene Name: LOC101929319
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-541
0.037
1
8mer
372-388
0.037
1
6mer
1439-1465
0.004
1
PCAT19
hsa-miR-20b-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595837
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
30-50
0.051
1
6mer
760-781
0.014
1
6mer
982-1008
0.013
1
XLOC_001668
hsa-miR-20b-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5159-5179
0.043
1
9mer
5637-5656
0.018
0
6mer
2383-2407
0.007
1
6mer
3691-3710
0.005
1
6mer
3137-3161
0.003
0
RP11-809F4.3
hsa-miR-20b-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
401-427
0.066
1
6mer
872-898
0.010
1
RP1-184J9.2
hsa-miR-20b-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427154
Biotype: antisense
Gene id: ENSG00000240553
Gene Name: RP1-184J9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-496
0.075
10
TTTY15
hsa-miR-20b-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2924-2944
0.020
0
6mer
56-80
0.016
0
8mer
4000-4019
0.014
0
6mer
3141-3157
0.009
0
6mer
1088-1108
0.008
0
6mer
3944-3963
0.007
0
XLOC_000782
hsa-miR-20b-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2281-2301
0.074
0
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