LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
RP11-473M20.16
hsa-miR-20b-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570843
Biotype: lincRNA
Gene id: ENSG00000261889
Gene Name: RP11-473M20.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
174-198
0.024
1
7mer
454-474
0.013
1
RP11-582J16.4
hsa-miR-20b-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514980
Biotype: antisense
Gene id: ENSG00000251034
Gene Name: RP11-582J16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-164
0.017
2
7mer
496-517
0.011
1
8mer
452-472
0.010
0
RP11-451G4.2
hsa-miR-20b-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037902.1
Biotype: lincRNA
Gene id: NR_037902.1 (gene)
Gene Name: RP11-451G4.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
256-276
0.018
1
6mer
511-530
0.011
5
8mer
482-505
0.009
0
XXbac-B461K10.4
hsa-miR-20b-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000476405
Biotype: retained_intron
Gene id: ENSG00000093100
Gene Name: XXbac-B461K10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
541-562
0.036
2
6mer
2358-2382
0.002
7
RP11-340I6.7
hsa-miR-20b-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000596569
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
767-782
0.024
0
6mer
624-646
0.013
0
SNHG14
hsa-miR-20b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000551361
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-177
0.026
2
6mer
116-141
0.012
3
CTD-2561J22.5
hsa-miR-20b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
497-510
0.010
1
7mer
2563-2584
0.006
1
6mer
3661-3676
0.006
1
7mer
1013-1035
0.005
1
6mer
4074-4087
0.004
0
6mer
2219-2234
0.003
1
6mer
3535-3559
0.002
0
6mer
2411-2424
0.001
0
XLOC_010290
hsa-miR-20b-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-121
0.038
0
LINC00421
hsa-miR-20b-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-121
0.037
0
RP11-34P13.8
hsa-miR-20b-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000495576
Biotype: lincRNA
Gene id: ENSG00000239945
Gene Name: RP11-34P13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
253-271
0.037
Not Conserved
HAND2-AS1
hsa-miR-20b-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502896
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4433-4453
0.020
8
8mer
2783-2809
0.008
7
6mer
2511-2530
0.004
6
6mer
243-263
0.003
1
6mer
2773-2788
0.001
Not Conserved
6mer
2590-2609
0.001
4
XLOC_005477
hsa-miR-20b-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012606
Biotype: transcript isomorph
Gene id: XLOC_005477
Gene Name: XLOC_005477
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-39
0.024
1
9mer
135-157
0.013
1
KLHL7-AS1
hsa-miR-20b-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419813
Biotype: lincRNA
Gene id: ENSG00000230658
Gene Name: KLHL7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-636
0.029
1
6mer
1816-1834
0.004
0
6mer
869-890
0.004
1
RP11-804H8.6
hsa-miR-20b-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608605
Biotype: lincRNA
Gene id: ENSG00000273356
Gene Name: RP11-804H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1293-1316
0.023
2
6mer
1953-1967
0.004
0
6mer
612-628
0.004
3
7mer
705-718
0.004
0
6mer
979-999
0.003
1
RP11-7K24.3
hsa-miR-20b-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000562471
Biotype: lincRNA
Gene id: ENSG00000261068
Gene Name: RP11-7K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1608-1627
0.010
1
9mer
1373-1393
0.009
1
7mer
1660-1683
0.008
0
7mer
54-66
0.006
0
6mer
759-777
0.002
0
6mer
1096-1110
0.002
Not Conserved
TMEM51-AS1
hsa-miR-20b-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000310916
Biotype: antisense
Gene id: ENSG00000175147
Gene Name: TMEM51-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-470
0.028
1
8mer
957-981
0.007
0
6mer
5714-5730
0.002
0
SOX2-OT
hsa-miR-20b-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597347
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
814-838
0.029
4
6mer
1228-1244
0.005
5
6mer
628-654
0.003
1
RP11-60H5.1
hsa-miR-20b-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567718
Biotype: lincRNA
Gene id: ENSG00000260840
Gene Name: RP11-60H5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-51
0.017
1
6mer
2903-2923
0.007
3
7mer
615-634
0.007
0
6mer
446-467
0.006
2
CTC-529L17.2
hsa-miR-20b-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503489
Biotype: lincRNA
Gene id: ENSG00000249984
Gene Name: CTC-529L17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-181
0.037
2
CTC-457E21.1
hsa-miR-20b-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562262
Biotype: sense_intronic
Gene id: ENSG00000260599
Gene Name: CTC-457E21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2708-2732
0.018
0
6mer
25-48
0.009
0
6mer
3068-3092
0.008
0
6mer
1327-1343
0.003
0
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