LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20b-5p


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Gene
miRNA
Score
DIANA Links
AC144831.1
hsa-miR-20b-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573312
Biotype: lincRNA
Gene id: ENSG00000261888
Gene Name: AC144831.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2350-2373
0.027
1
9mer
371-395
0.010
0
6mer
2071-2096
0.005
1
LINC00536
hsa-miR-20b-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505156
Biotype: lincRNA
Gene id: ENSG00000249917
Gene Name: LINC00536
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2564-2585
0.043
8
FLJ42627
hsa-miR-20b-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563449
Biotype: antisense
Gene id: ENSG00000261613
Gene Name: FLJ42627
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-73
0.043
2
LL22NC03-22D1.1
hsa-miR-20b-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
104-123
0.007
3
6mer
13365-13385
0.003
6
9mer
3878-3898
0.003
1
6mer
18734-18754
0.003
2
6mer
15386-15412
0.003
1
7mer
17714-17723
0.002
0
6mer
4574-4598
0.002
1
6mer
28091-28107
0.002
1
6mer
7767-7779
0.002
1
6mer
17233-17250
0.002
0
6mer
18523-18537
0.002
1
6mer
10005-10013
0.002
0
6mer
13861-13879
0.002
2
6mer
23962-23970
0.001
0
6mer
2471-2497
0.001
0
6mer
8463-8473
0.001
Not Conserved
6mer
1341-1363
0.001
0
6mer
27137-27162
0.001
Not Conserved
6mer
18774-18801
0.001
0
C10orf40
hsa-miR-20b-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000521074
Biotype: lincRNA
Gene id: ENSG00000235931
Gene Name: C10orf40
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
419-440
0.026
0
7mer
1468-1487
0.009
0
9mer
1026-1050
0.004
0
9mer
2088-2112
0.004
0
AC005083.1
hsa-miR-20b-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439446
Biotype: retained_intron
Gene id: ENSG00000233834
Gene Name: AC005083.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
632-655
0.043
0
RP11-471B22.3
hsa-miR-20b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000615251
Biotype: lincRNA
Gene id: ENSG00000275198
Gene Name: RP11-471B22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4013-4030
0.015
10
8mer
446-473
0.015
2
6mer
4109-4133
0.005
6
9mer
2561-2585
0.003
0
6mer
3083-3107
0.003
4
6mer
1197-1222
0.002
1
RP11-532N4.2
hsa-miR-20b-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000587106
Biotype: antisense
Gene id: ENSG00000235535
Gene Name: RP11-532N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2841-2863
0.024
10
7mer
2515-2540
0.008
0
7mer
1170-1193
0.006
1
6mer
671-689
0.003
2
6mer
1835-1852
0.002
0
AC078883.4
hsa-miR-20b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441212
Biotype: antisense
Gene id: ENSG00000226963
Gene Name: AC078883.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
194-211
0.042
5
XLOC_011038
hsa-miR-20b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022755
Biotype: transcript isomorph
Gene id: XLOC_011038
Gene Name: XLOC_011038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-283
0.042
10
RP1-228P16.8
hsa-miR-20b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000616571
Biotype: lincRNA
Gene id: ENSG00000276814
Gene Name: RP1-228P16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-232
0.042
7
CKMT2-AS1
hsa-miR-20b-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501927
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-218
0.022
1
9mer
586-599
0.018
0
6mer
1921-1941
0.002
1
CTD-2135D7.2
hsa-miR-20b-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575137
Biotype: antisense
Gene id: ENSG00000262732
Gene Name: CTD-2135D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-311
0.018
1
6mer
261-287
0.006
4
7mer
709-735
0.005
2
7mer
1672-1687
0.004
0
6mer
944-956
0.003
1
7mer
3550-3574
0.003
6
6mer
1923-1948
0.002
2
6mer
1706-1726
0.001
1
XLOC_001931
hsa-miR-20b-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004095
Biotype: transcript isomorph
Gene id: XLOC_001931
Gene Name: XLOC_001931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-227
0.036
0
6mer
350-368
0.006
0
RP11-757G1.6
hsa-miR-20b-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2811-2831
0.020
0
6mer
911-927
0.009
0
6mer
1679-1694
0.007
0
6mer
1245-1271
0.006
0
RP11-526P5.2
hsa-miR-20b-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000438753
Biotype: lincRNA
Gene id: ENSG00000235281
Gene Name: RP11-526P5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
640-655
0.042
2
XLOC_002542
hsa-miR-20b-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004628
Biotype: transcript isomorph
Gene id: XLOC_002542
Gene Name: XLOC_002542
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-638
0.036
2
7mer
383-394
0.006
0
XLOC_011623
hsa-miR-20b-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024244
Biotype: transcript isomorph
Gene id: XLOC_011623
Gene Name: XLOC_011623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1784-1801
0.042
2
AC005083.1
hsa-miR-20b-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430859
Biotype: lincRNA
Gene id: ENSG00000233834
Gene Name: AC005083.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
704-727
0.042
0
CTD-2095E4.5
hsa-miR-20b-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613639
Biotype: lincRNA
Gene id: ENSG00000277511
Gene Name: CTD-2095E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20b-5p
Sequence: caaagugcucauagugcagguag
MirBase ID: MIMAT0001413
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
813-829
0.042
0
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