LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RP11-314O13.1
hsa-miR-20a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562231
Biotype: lincRNA
Gene id: ENSG00000260896
Gene Name: RP11-314O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1205-1224
0.019
5
7mer
853-872
0.005
1
MIAT
hsa-miR-20a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000436238
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-633
0.021
0
6mer
695-706
0.004
1
ASAP1-IT2
hsa-miR-20a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_045385.1
Biotype: sense
Gene id: NR_045385.1 (gene)
Gene Name: ASAP1-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1316-1340
0.011
0
8mer
81-105
0.009
0
6mer
1564-1582
0.005
2
AC105339.1
hsa-miR-20a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559535
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-193
0.014
4
6mer
356-378
0.011
6
RP11-627G18.4
hsa-miR-20a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578741
Biotype: lincRNA
Gene id: ENSG00000264825
Gene Name: RP11-627G18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-194
0.012
1
6mer
83-101
0.007
3
6mer
128-141
0.006
1
CTD-2349P21.5
hsa-miR-20a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581019
Biotype: lincRNA
Gene id: ENSG00000263603
Gene Name: CTD-2349P21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
705-730
0.025
1
RP11-337N6.3
hsa-miR-20a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000624891
Biotype: sense_intronic
Gene id: ENSG00000280374
Gene Name: RP11-337N6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-33
0.018
Not Conserved
6mer
48-69
0.007
3
ARHGEF26-AS1
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610221
Biotype: retained_intron
Gene id: ENSG00000243069
Gene Name: ARHGEF26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
510-537
0.025
0
RP11-804A23.1
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000541495
Biotype: antisense
Gene id: ENSG00000255845
Gene Name: RP11-804A23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-303
0.025
1
FAM87A
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000330148
Biotype: lincRNA
Gene id: ENSG00000182366
Gene Name: FAM87A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3543-3557
0.014
1
7mer
1377-1403
0.006
0
6mer
723-741
0.004
1
6mer
1548-1564
0.001
Not Conserved
PRICKLE2-AS1
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000476308
Biotype: antisense
Gene id: ENSG00000241572
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-537
0.025
2
XLOC_013601
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028261
Biotype: transcript isomorph
Gene id: XLOC_013601
Gene Name: XLOC_013601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8558-8580
0.013
1
7mer
9223-9238
0.004
1
6mer
6641-6663
0.003
4
7mer
3566-3588
0.002
1
6mer
1658-1676
0.002
2
6mer
6312-6330
0.001
0
TCL6
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000497248
Biotype: retained_intron
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4217-4231
0.019
1
6mer
414-434
0.006
2
CTD-2349P21.5
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579639
Biotype: lincRNA
Gene id: ENSG00000263603
Gene Name: CTD-2349P21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-256
0.025
1
CTC-565M22.1
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593140
Biotype: lincRNA
Gene id: ENSG00000267760
Gene Name: CTC-565M22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-505
0.025
1
XLOC_007868
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016491
Biotype: transcript isomorph
Gene id: XLOC_007868
Gene Name: XLOC_007868
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5893-5903
0.012
1
8mer
2492-2516
0.003
1
8mer
3927-3951
0.003
0
8mer
2358-2378
0.002
1
8mer+wobble
3262-3279
0.002
0
8mer
1495-1509
0.002
0
6mer
1536-1555
0.001
1
WASF3-AS1
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000585599
Biotype: antisense
Gene id: ENSG00000237001
Gene Name: WASF3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-171
0.025
1
CTD-2076M15.1
hsa-miR-20a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561587
Biotype: lincRNA
Gene id: ENSG00000260683
Gene Name: CTD-2076M15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1172-1194
0.010
1
6mer
804-817
0.009
1
6mer
398-419
0.006
0
RP11-485G4.2
hsa-miR-20a-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608374
Biotype: lincRNA
Gene id: ENSG00000272565
Gene Name: RP11-485G4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3837-3858
0.005
0
8mer
3457-3477
0.005
1
8mer
685-709
0.005
0
7mer
1898-1923
0.004
1
8mer
2582-2606
0.003
1
6mer
2879-2897
0.002
3
RP11-319E16.2
hsa-miR-20a-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544842
Biotype: lincRNA
Gene id: ENSG00000256146
Gene Name: RP11-319E16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2803-2814
0.010
1
6mer
226-239
0.005
Not Conserved
6mer
2258-2282
0.003
1
6mer
540-559
0.003
2
6mer
865-884
0.002
1
6mer
902-920
0.002
0
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