LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
MYHAS
hsa-miR-20a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587182
Biotype: antisense
Gene id: ENSG00000272975
Gene Name: MYHAS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1992-2013
0.011
Not Conserved
7mer
543-567
0.010
0
6mer
201-215
0.004
1
XLOC_003546
hsa-miR-20a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007535
Biotype: transcript isomorph
Gene id: XLOC_003546
Gene Name: XLOC_003546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
16-42
0.008
3
6mer
590-603
0.006
1
7mer
2545-2562
0.005
Not Conserved
6mer
2829-2847
0.004
1
6mer
902-920
0.003
1
RP1-63G5.7
hsa-miR-20a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000445088
Biotype: sense_intronic
Gene id: ENSG00000237862
Gene Name: RP1-63G5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
787-809
0.024
1
6mer
775-796
0.001
0
CTD-2340E1.2
hsa-miR-20a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501405
Biotype: lincRNA
Gene id: ENSG00000247402
Gene Name: CTD-2340E1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-144
0.025
1
RP11-569G13.2
hsa-miR-20a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_033838.1
Biotype: lincRNA
Gene id: NR_033838.1 (gene)
Gene Name: RP11-569G13.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2407-2421
0.020
1
7mer
1164-1186
0.005
0
XLOC_002938
hsa-miR-20a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006322
Biotype: transcript isomorph
Gene id: XLOC_002938
Gene Name: XLOC_002938
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1592-1608
0.020
1
6mer
1289-1316
0.005
1
XLOC_003653
hsa-miR-20a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008872
Biotype: transcript isomorph
Gene id: XLOC_003653
Gene Name: XLOC_003653
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
744-759
0.025
1
LINC01501
hsa-miR-20a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427523
Biotype: lincRNA
Gene id: ENSG00000229613
Gene Name: LINC01501
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-123
0.020
1
6mer
214-233
0.005
1
SCEL-AS1
hsa-miR-20a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456280
Biotype: antisense
Gene id: ENSG00000224347
Gene Name: SCEL-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-461
0.025
5
AF003625.3
hsa-miR-20a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602313
Biotype: lincRNA
Gene id: ENSG00000269993
Gene Name: AF003625.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-358
0.025
3
RP11-933H2.4
hsa-miR-20a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000502521
Biotype: antisense
Gene id: ENSG00000250608
Gene Name: RP11-933H2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-243
0.022
2
6mer
770-795
0.003
Not Conserved
MIAT
hsa-miR-20a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000419237
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-517
0.025
0
AC105339.1
hsa-miR-20a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440089
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
171-193
0.014
4
6mer
471-493
0.011
6
HIPK1-AS1
hsa-miR-20a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441071
Biotype: antisense
Gene id: ENSG00000235527
Gene Name: HIPK1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-77
0.025
1
AC012613.2
hsa-miR-20a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523176
Biotype: antisense
Gene id: ENSG00000253406
Gene Name: AC012613.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3779-3795
0.014
0
8mer
2944-2969
0.006
1
6mer
1941-1957
0.002
0
6mer
882-904
0.001
0
6mer
2859-2878
0.001
1
SLC8A1-AS1
hsa-miR-20a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620276
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-102
0.025
1
AC005754.7
hsa-miR-20a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607216
Biotype: antisense
Gene id: ENSG00000272154
Gene Name: AC005754.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-36
0.014
0
7mer
402-416
0.011
3
LA16c-360H6.3
hsa-miR-20a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574245
Biotype: antisense
Gene id: ENSG00000262899
Gene Name: LA16c-360H6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-295
0.016
0
8mer
219-238
0.009
1
CTD-2192J16.26
hsa-miR-20a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593554
Biotype: lincRNA
Gene id: ENSG00000268945
Gene Name: CTD-2192J16.26
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-283
0.025
1
RP11-436F21.1
hsa-miR-20a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421507
Biotype: lincRNA
Gene id: ENSG00000226566
Gene Name: RP11-436F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-343
0.025
1
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