LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
CTD-3028N15.1
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556389
Biotype: antisense
Gene id: ENSG00000249163
Gene Name: CTD-3028N15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-45
0.026
1
RP11-557H15.4
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000423028
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-166
0.026
Not Conserved
XXbac-BPGBPG55C20.2
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606125
Biotype: lincRNA
Gene id: ENSG00000272316
Gene Name: XXbac-BPGBPG55C20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4417-4440
0.010
Not Conserved
6mer
5035-5050
0.003
Not Conserved
6mer
1421-1437
0.003
2
6mer
4120-4147
0.002
0
6mer
3519-3539
0.002
0
6mer
1986-2011
0.002
1
6mer
3135-3159
0.002
0
6mer
2322-2347
0.002
0
XLOC_006942
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014875
Biotype: transcript isomorph
Gene id: XLOC_006942
Gene Name: XLOC_006942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
993-1007
0.012
1
7mer
1522-1544
0.008
1
6mer
1065-1083
0.004
1
6mer
994-1014
0.002
1
RP11-8P11.3
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562031
Biotype: lincRNA
Gene id: ENSG00000260469
Gene Name: RP11-8P11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
316-340
0.020
0
6mer
483-496
0.006
2
XLOC_011011
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023103
Biotype: transcript isomorph
Gene id: XLOC_011011
Gene Name: XLOC_011011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-39
0.026
1
RP11-861A13.4
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110030.1
Biotype: lincRNA
Gene id: NR_110030.1 (gene)
Gene Name: RP11-861A13.4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2019-2042
0.015
1
6mer
1739-1766
0.006
5
6mer
2165-2175
0.006
1
RP11-95P2.1
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573042
Biotype: lincRNA
Gene id: ENSG00000262468
Gene Name: RP11-95P2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
895-915
0.012
1
7mer
240-262
0.009
1
7mer
64-88
0.005
0
AC084219.4
hsa-miR-20a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592946
Biotype: antisense
Gene id: ENSG00000186019
Gene Name: AC084219.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2616-2643
0.020
0
6mer
80-101
0.006
0
RP11-339A11.2
hsa-miR-20a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000567886
Biotype: lincRNA
Gene id: ENSG00000260322
Gene Name: RP11-339A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1815-1836
0.026
0
RP11-557H15.4
hsa-miR-20a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418837
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-159
0.026
Not Conserved
RP11-4M23.3
hsa-miR-20a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411815
Biotype: antisense
Gene id: ENSG00000232557
Gene Name: RP11-4M23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
22-42
0.026
0
XLOC_010354
hsa-miR-20a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021760
Biotype: transcript isomorph
Gene id: XLOC_010354
Gene Name: XLOC_010354
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-251
0.013
0
7mer
867-888
0.009
Not Conserved
6mer
107-126
0.004
1
RP11-365P13.5
hsa-miR-20a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000620246
Biotype: lincRNA
Gene id: ENSG00000277767
Gene Name: RP11-365P13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1809-1823
0.022
1
6mer
137-160
0.004
0
CTD-2537I9.13
hsa-miR-20a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592252
Biotype: sense_intronic
Gene id: ENSG00000267096
Gene Name: CTD-2537I9.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
593-617
0.026
1
RP11-290F20.1
hsa-miR-20a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_034124.1
Biotype: lincRNA
Gene id: NR_034124.1 (gene)
Gene Name: RP11-290F20.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-43
0.026
5
RP11-685F15.1
hsa-miR-20a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509641
Biotype: lincRNA
Gene id: ENSG00000251049
Gene Name: RP11-685F15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
584-605
0.026
1
LOC101928604
hsa-miR-20a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110081.1
Biotype: antisense
Gene id: NR_110081.1 (gene)
Gene Name: LOC101928604
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
980-999
0.014
0
8mer
828-852
0.008
0
7mer
404-426
0.004
0
AC104781.1
hsa-miR-20a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449838
Biotype: antisense
Gene id: ENSG00000231334
Gene Name: AC104781.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-82
0.016
0
6mer
10-35
0.009
2
RP11-53O19.2
hsa-miR-20a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511712
Biotype: lincRNA
Gene id: ENSG00000248779
Gene Name: RP11-53O19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
567-590
0.026
1
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