LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RPARP-AS1
hsa-miR-20a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000597488
Biotype: retained_intron
Gene id: ENSG00000269609
Gene Name: RPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1835-1858
0.020
1
6mer
1396-1414
0.004
2
6mer
1049-1069
0.003
1
LOC102659288
hsa-miR-20a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110014.1
Biotype: lincRNA
Gene id: NR_110014.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1120-1141
0.026
0
XLOC_007301
hsa-miR-20a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015656
Biotype: transcript isomorph
Gene id: XLOC_007301
Gene Name: XLOC_007301
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1154-1174
0.022
5
6mer
978-994
0.004
2
XLOC_004192
hsa-miR-20a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008673
Biotype: transcript isomorph
Gene id: XLOC_004192
Gene Name: XLOC_004192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2468-2491
0.013
1
6mer
628-643
0.004
2
6mer
3072-3098
0.003
1
6mer
2867-2877
0.003
1
6mer
1366-1388
0.002
0
6mer
3503-3524
0.002
Not Conserved
LINC01498
hsa-miR-20a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502160
Biotype: antisense
Gene id: ENSG00000247213
Gene Name: LINC01498
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2668-2689
0.017
1
7mer
52-72
0.009
0
AC090044.1
hsa-miR-20a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110118.1
Biotype: lincRNA
Gene id: NR_110118.1 (gene)
Gene Name: AC090044.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3020-3040
0.007
0
7mer
2393-2419
0.007
1
6mer
426-450
0.005
1
6mer
1517-1538
0.002
1
6mer
448-470
0.002
0
6mer
1710-1727
0.002
3
RP11-321L2.1
hsa-miR-20a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423440
Biotype: lincRNA
Gene id: ENSG00000231460
Gene Name: RP11-321L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1157-1177
0.022
5
6mer
981-997
0.004
2
RP11-166A12.1
hsa-miR-20a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508992
Biotype: lincRNA
Gene id: ENSG00000251538
Gene Name: RP11-166A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-181
0.026
5
RP11-254F19.3
hsa-miR-20a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569104
Biotype: lincRNA
Gene id: ENSG00000260340
Gene Name: RP11-254F19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-181
0.026
1
XLOC_010219
hsa-miR-20a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020953
Biotype: transcript isomorph
Gene id: XLOC_010219
Gene Name: XLOC_010219
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1119-1141
0.021
Not Conserved
6mer
154-172
0.005
0
XLOC_007688
hsa-miR-20a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015809
Biotype: transcript isomorph
Gene id: XLOC_007688
Gene Name: XLOC_007688
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
967-987
0.014
0
6mer
187-214
0.006
0
6mer
3-27
0.005
Not Conserved
RP11-412D9.4
hsa-miR-20a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000570282
Biotype: antisense
Gene id: ENSG00000260329
Gene Name: RP11-412D9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1363-1381
0.026
1
RP11-557H15.4
hsa-miR-20a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607531
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-170
0.026
Not Conserved
AP000330.8
hsa-miR-20a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_038885.1
Biotype: lincRNA
Gene id: NR_038885.1 (gene)
Gene Name: AP000330.8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1620-1635
0.011
1
6mer
1854-1876
0.004
1
8mer
1539-1560
0.004
0
6mer
673-700
0.004
1
6mer
2283-2307
0.003
1
LINC01215
hsa-miR-20a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607746
Biotype: lincRNA
Gene id: ENSG00000271856
Gene Name: LINC01215
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
2235-2258
0.015
1
6mer
2381-2391
0.006
1
6mer
1955-1982
0.006
5
LINC00996
hsa-miR-20a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000477392
Biotype: lincRNA
Gene id: ENSG00000242258
Gene Name: LINC00996
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1512-1524
0.012
2
6mer
51-64
0.008
1
7mer
858-880
0.006
1
RP11-309L24.4
hsa-miR-20a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609480
Biotype: lincRNA
Gene id: ENSG00000272899
Gene Name: RP11-309L24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3538-3561
0.011
0
7mer
520-544
0.007
Not Conserved
8mer
2319-2339
0.006
2
6mer
2920-2937
0.002
1
LINC00700
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454424
Biotype: lincRNA
Gene id: ENSG00000234962
Gene Name: LINC00700
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-338
0.021
1
6mer
430-455
0.005
1
RP11-117D22.2
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449958
Biotype: lincRNA
Gene id: ENSG00000230138
Gene Name: RP11-117D22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
616-633
0.018
0
8mer
98-117
0.008
0
LOC285768
hsa-miR-20a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027116.1
Biotype: lincRNA
Gene id: NR_027116.1 (gene)
Gene Name: LOC285768
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1809-1823
0.017
Not Conserved
6mer
108-135
0.003
Not Conserved
6mer
424-444
0.003
Not Conserved
6mer
1067-1083
0.002
Not Conserved
6mer
912-935
0.001
Not Conserved
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