LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_002368
hsa-miR-20a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005258
Biotype: transcript isomorph
Gene id: XLOC_002368
Gene Name: XLOC_002368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2193-2214
0.014
6
7mer
3655-3662
0.005
1
6mer
1700-1726
0.003
5
6mer
4245-4268
0.003
1
6mer
2808-2835
0.001
1
LINC01207
hsa-miR-20a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507311
Biotype: lincRNA
Gene id: ENSG00000248771
Gene Name: LINC01207
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2862-2880
0.017
1
6mer
860-878
0.004
1
8mer
1295-1319
0.003
0
6mer
2041-2060
0.002
1
XLOC_010891
hsa-miR-20a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022577
Biotype: transcript isomorph
Gene id: XLOC_010891
Gene Name: XLOC_010891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
238-256
0.015
0
7mer
221-239
0.012
0
ACVR2B-AS1
hsa-miR-20a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441531
Biotype: antisense
Gene id: ENSG00000229589
Gene Name: ACVR2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2157-2177
0.014
0
8mer
1668-1686
0.011
0
6mer
1313-1331
0.002
3
RP11-179K3.2
hsa-miR-20a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425902
Biotype: lincRNA
Gene id: ENSG00000224714
Gene Name: RP11-179K3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-93
0.022
1
8mer
1566-1590
0.005
0
XLOC_012711
hsa-miR-20a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026359
Biotype: transcript isomorph
Gene id: XLOC_012711
Gene Name: XLOC_012711
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-320
0.027
5
XLOC_009530
hsa-miR-20a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020122
Biotype: transcript isomorph
Gene id: XLOC_009530
Gene Name: XLOC_009530
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-75
0.027
0
SCARNA15
hsa-miR-20a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000607520
Biotype: retained_intron
Gene id: ENSG00000252690
Gene Name: SCARNA15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
644-661
0.011
1
6mer
4308-4322
0.008
2
6mer
3641-3654
0.004
4
6mer
788-807
0.003
1
XLOC_007171
hsa-miR-20a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015115
Biotype: transcript isomorph
Gene id: XLOC_007171
Gene Name: XLOC_007171
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-87
0.027
1
AL133245.2
hsa-miR-20a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608925
Biotype: lincRNA
Gene id: ENSG00000272754
Gene Name: AL133245.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1104-1123
0.023
0
8mer
705-725
0.004
Not Conserved
AC090587.2
hsa-miR-20a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000507938
Biotype: sense_overlapping
Gene id: ENSG00000250404
Gene Name: AC090587.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2434-2458
0.007
1
8mer
1349-1369
0.006
1
6mer
734-757
0.005
9
6mer
680-704
0.005
8
6mer
523-547
0.003
3
LINC01004
hsa-miR-20a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4717-4736
0.006
2
7mer
8400-8419
0.006
0
7mer
4453-4467
0.005
2
6mer
9178-9204
0.004
2
7mer
2739-2754
0.003
1
6mer
6375-6402
0.002
1
XLOC_001198
hsa-miR-20a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001814
Biotype: transcript isomorph
Gene id: XLOC_001198
Gene Name: XLOC_001198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
953-972
0.021
1
6mer
318-343
0.006
1
RP11-17A1.3
hsa-miR-20a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525963
Biotype: antisense
Gene id: ENSG00000246225
Gene Name: RP11-17A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
682-709
0.018
2
6mer
733-748
0.005
1
6mer
551-574
0.004
2
RP11-133L19.3
hsa-miR-20a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000614907
Biotype: sense_intronic
Gene id: ENSG00000273540
Gene Name: RP11-133L19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-217
0.015
1
6mer
1676-1687
0.012
7
RP3-329A5.8
hsa-miR-20a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605896
Biotype: lincRNA
Gene id: ENSG00000272374
Gene Name: RP3-329A5.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-440
0.024
2
6mer
3596-3618
0.003
0
RP11-404P21.5
hsa-miR-20a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555383
Biotype: sense_intronic
Gene id: ENSG00000258412
Gene Name: RP11-404P21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-435
0.027
1
CTD-3051D23.4
hsa-miR-20a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553344
Biotype: lincRNA
Gene id: ENSG00000258593
Gene Name: CTD-3051D23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-314
0.017
0
8mer
637-657
0.010
0
RP11-323I15.5
hsa-miR-20a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559246
Biotype: lincRNA
Gene id: ENSG00000259336
Gene Name: RP11-323I15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
632-653
0.022
0
6mer
1037-1047
0.004
1
RP5-1022J11.2
hsa-miR-20a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000416237
Biotype: lincRNA
Gene id: ENSG00000232465
Gene Name: RP5-1022J11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-65
0.027
2
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