LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
LINC00029
hsa-miR-20a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000370341
Biotype: lincRNA
Gene id: ENSG00000125514
Gene Name: LINC00029
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-96
0.027
1
RP11-504I13.3
hsa-miR-20a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583287
Biotype: antisense
Gene id: ENSG00000263982
Gene Name: RP11-504I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-190
0.027
1
XLOC_008274
hsa-miR-20a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
800-826
0.017
1
8mer
1791-1811
0.005
0
7mer
3146-3158
0.002
Not Conserved
6mer
2074-2083
0.002
0
6mer
2161-2182
0.002
1
CTD-2162K18.3
hsa-miR-20a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588717
Biotype: lincRNA
Gene id: ENSG00000267353
Gene Name: CTD-2162K18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1417-1441
0.008
0
6mer
11-33
0.007
0
6mer
718-731
0.007
1
6mer
1013-1033
0.005
1
CTD-2561J22.5
hsa-miR-20a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
497-510
0.010
1
6mer
827-848
0.005
1
6mer
2563-2584
0.004
1
6mer
1013-1025
0.004
1
6mer
2219-2234
0.003
1
6mer
2411-2424
0.001
0
XLOC_001066
hsa-miR-20a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001706
Biotype: transcript isomorph
Gene id: XLOC_001066
Gene Name: XLOC_001066
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-448
0.023
0
6mer
391-407
0.004
0
XLOC_001716
hsa-miR-20a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003910
Biotype: transcript isomorph
Gene id: XLOC_001716
Gene Name: XLOC_001716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
569-592
0.015
2
7mer
143-162
0.012
0
CTC-459F4.1
hsa-miR-20a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562493
Biotype: lincRNA
Gene id: ENSG00000261770
Gene Name: CTC-459F4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-422
0.016
0
6mer
3511-3524
0.004
0
6mer
387-401
0.003
Not Conserved
6mer
637-660
0.003
0
6mer
1152-1165
0.002
0
WDFY3-AS2
hsa-miR-20a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000451762
Biotype: antisense
Gene id: ENSG00000180769
Gene Name: WDFY3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5598-5621
0.005
1
6mer
5381-5404
0.004
1
6mer
5110-5127
0.004
1
6mer
5256-5265
0.003
1
6mer
2310-2330
0.002
0
6mer
1585-1606
0.002
2
6mer
1461-1482
0.002
1
6mer
4434-4456
0.002
1
6mer
2478-2494
0.002
1
6mer
3532-3550
0.001
0
6mer
3581-3604
0.001
0
LINC01104
hsa-miR-20a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452354
Biotype: lincRNA
Gene id: ENSG00000232084
Gene Name: LINC01104
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
23-38
0.012
6
8mer
2859-2883
0.009
1
6mer
2354-2380
0.003
1
6mer
2461-2485
0.003
1
XLOC_007942
hsa-miR-20a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016971
Biotype: transcript isomorph
Gene id: XLOC_007942
Gene Name: XLOC_007942
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7514-7534
0.013
1
8mer
4492-4510
0.004
1
6mer
6442-6460
0.003
Not Conserved
6mer
1369-1382
0.002
0
6mer
3233-3249
0.002
1
6mer
4861-4873
0.002
2
6mer
6070-6094
0.002
0
6mer
1371-1391
0.001
0
RP11-519M16.1
hsa-miR-20a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500092
Biotype: lincRNA
Gene id: ENSG00000246876
Gene Name: RP11-519M16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
791-814
0.011
0
6mer
10-34
0.009
4
8mer
1743-1767
0.007
0
RP11-126K15.1
hsa-miR-20a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578740
Biotype: lincRNA
Gene id: ENSG00000265380
Gene Name: RP11-126K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-40
0.027
4
AC007128.1
hsa-miR-20a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424460
Biotype: antisense
Gene id: ENSG00000229970
Gene Name: AC007128.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1072-1087
0.021
9
6mer
1463-1476
0.006
4
RP5-965G21.3
hsa-miR-20a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613361
Biotype: lincRNA
Gene id: ENSG00000277938
Gene Name: RP5-965G21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1834-1854
0.010
0
8mer
1527-1551
0.008
0
8mer
2312-2336
0.005
0
6mer
2263-2282
0.005
1
APELA
hsa-miR-20a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_038825.1
Biotype: sense
Gene id: NR_038825.1 (gene)
Gene Name: APELA
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2427-2451
0.022
0
6mer
1806-1828
0.003
0
6mer
489-512
0.003
1
RP11-2E11.5
hsa-miR-20a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000562524
Biotype: lincRNA
Gene id: ENSG00000259920
Gene Name: RP11-2E11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2252-2271
0.013
1
8mer+mismatch
2518-2538
0.008
2
6mer
1718-1741
0.004
6
6mer
1451-1470
0.002
0
AC022819.3
hsa-miR-20a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563495
Biotype: sense_intronic
Gene id: ENSG00000259921
Gene Name: AC022819.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-266
0.010
1
8mer
752-777
0.008
1
6mer
594-608
0.003
1
6mer
3275-3290
0.003
1
6mer
3061-3079
0.003
1
XLOC_004680
hsa-miR-20a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010211
Biotype: transcript isomorph
Gene id: XLOC_004680
Gene Name: XLOC_004680
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HeLa Cervix Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-635
0.027
1
TSG1
hsa-miR-20a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_015362.1
Biotype: lincRNA
Gene id: NR_015362.1 (gene)
Gene Name: TSG1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4099-4123
0.020
0
6mer
291-299
0.004
0
6mer
3244-3262
0.002
1
6mer
1580-1606
0.001
0
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