LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RP11-166B2.3
hsa-miR-20a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568144
Biotype: sense_intronic
Gene id: ENSG00000261560
Gene Name: RP11-166B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-861
0.014
0
8mer
84-104
0.014
1
AC007750.5
hsa-miR-20a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418968
Biotype: antisense
Gene id: ENSG00000236841
Gene Name: AC007750.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3076-3100
0.011
Not Conserved
6mer
3577-3599
0.006
1
6mer
1000-1022
0.003
1
6mer
1228-1250
0.003
4
6mer
2483-2495
0.003
2
6mer
1563-1580
0.002
6
XLOC_004258
hsa-miR-20a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009846
Biotype: transcript isomorph
Gene id: XLOC_004258
Gene Name: XLOC_004258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1432-1447
0.025
1
6mer
435-460
0.003
0
KB-208E9.1
hsa-miR-20a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608615
Biotype: lincRNA
Gene id: ENSG00000272733
Gene Name: KB-208E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
762-775
0.028
0
RP5-898I4.1
hsa-miR-20a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623740
Biotype: sense_overlapping
Gene id: ENSG00000280395
Gene Name: RP5-898I4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3397-3413
0.016
Not Conserved
7mer
2442-2468
0.005
0
6mer
3453-3471
0.004
1
6mer
1166-1182
0.002
1
XLOC_010474
hsa-miR-20a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021875
Biotype: transcript isomorph
Gene id: XLOC_010474
Gene Name: XLOC_010474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-444
0.028
1
RP4-717I23.3
hsa-miR-20a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432741
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
231-251
0.028
3
XLOC_008014
hsa-miR-20a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017432
Biotype: transcript isomorph
Gene id: XLOC_008014
Gene Name: XLOC_008014
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1696-1721
0.018
3
7mer
122-132
0.010
2
RP4-547N15.3
hsa-miR-20a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621423
Biotype: sense_intronic
Gene id: ENSG00000275678
Gene Name: RP4-547N15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
693-717
0.014
1
6mer
391-402
0.005
1
6mer
968-985
0.005
1
6mer
1973-1995
0.004
0
XLOC_006249
hsa-miR-20a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013590
Biotype: transcript isomorph
Gene id: XLOC_006249
Gene Name: XLOC_006249
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-203
0.028
1
LOC100128885
hsa-miR-20a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3112-3135
0.013
0
6mer
4287-4307
0.008
0
6mer
3312-3329
0.005
0
6mer
2646-2663
0.001
Not Conserved
ERVH48-1
hsa-miR-20a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2180-2201
0.011
0
6mer
2022-2049
0.009
0
6mer
1540-1554
0.007
0
XLOC_009283
hsa-miR-20a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019480
Biotype: transcript isomorph
Gene id: XLOC_009283
Gene Name: XLOC_009283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1816-1836
0.023
1
6mer
1100-1121
0.002
1
6mer
913-927
0.002
0
RP11-395P13.1
hsa-miR-20a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511994
Biotype: lincRNA
Gene id: ENSG00000248147
Gene Name: RP11-395P13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
523-542
0.015
10
6mer
218-242
0.006
2
6mer
211-223
0.006
1
XLOC_005972
hsa-miR-20a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013326
Biotype: transcript isomorph
Gene id: XLOC_005972
Gene Name: XLOC_005972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2644-2668
0.012
1
9mer
593-617
0.011
0
8mer
1529-1553
0.005
0
XLOC_002616
hsa-miR-20a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005990
Biotype: transcript isomorph
Gene id: XLOC_002616
Gene Name: XLOC_002616
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-32
0.027
1
RP11-153M7.5
hsa-miR-20a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505051
Biotype: antisense
Gene id: ENSG00000249309
Gene Name: RP11-153M7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
456-475
0.027
1
CTD-2620I22.3
hsa-miR-20a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596769
Biotype: lincRNA
Gene id: ENSG00000267943
Gene Name: CTD-2620I22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3781-3801
0.020
1
6mer
2912-2935
0.004
1
6mer
871-893
0.003
0
6mer
2966-2989
0.001
0
AP003774.6
hsa-miR-20a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457725
Biotype: lincRNA
Gene id: ENSG00000231680
Gene Name: AP003774.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
688-715
0.027
1
XLOC_006293
hsa-miR-20a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012895
Biotype: transcript isomorph
Gene id: XLOC_006293
Gene Name: XLOC_006293
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2360-2372
0.012
2
6mer
51-64
0.008
1
7mer
1706-1728
0.005
1
6mer
747-768
0.002
0
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