LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
LAMTOR5-AS1
hsa-miR-20a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608253
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-845
0.028
1
LAMTOR5-AS1
hsa-miR-20a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000596890
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-189
0.017
1
7mer
93-115
0.011
1
RP11-415D17.3
hsa-miR-20a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415457
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-462
0.028
9
RP1-168L15.5
hsa-miR-20a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000568025
Biotype: antisense
Gene id: ENSG00000261420
Gene Name: RP1-168L15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1068-1092
0.014
1
8mer
333-353
0.008
1
8mer
749-773
0.004
Not Conserved
6mer
659-672
0.002
0
XXbac-BPG308K3.6
hsa-miR-20a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606727
Biotype: lincRNA
Gene id: ENSG00000225595
Gene Name: XXbac-BPG308K3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1160-1179
0.014
1
7mer
232-252
0.014
1
RP11-693J15.5
hsa-miR-20a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7973-7996
0.018
0
8mer
4349-4373
0.004
1
7mer
8739-8764
0.003
1
6mer
3576-3594
0.002
1
6mer
8935-8959
0.001
1
RP11-378E13.4
hsa-miR-20a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620218
Biotype: antisense
Gene id: ENSG00000273965
Gene Name: RP11-378E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
210-234
0.028
1
XLOC_004901
hsa-miR-20a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010966
Biotype: transcript isomorph
Gene id: XLOC_004901
Gene Name: XLOC_004901
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
691-710
0.015
1
6mer
126-152
0.007
1
6mer
32-58
0.007
1
XLOC_004536
hsa-miR-20a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010079
Biotype: transcript isomorph
Gene id: XLOC_004536
Gene Name: XLOC_004536
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1773-1797
0.020
1
6mer
810-828
0.007
10
RP11-428J1.4
hsa-miR-20a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606227
Biotype: lincRNA
Gene id: ENSG00000271978
Gene Name: RP11-428J1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2521-2539
0.028
0
RP11-282K24.3
hsa-miR-20a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4173-4193
0.013
0
6mer
5373-5389
0.006
0
6mer
4618-4637
0.004
1
6mer
581-598
0.003
1
6mer
3945-3959
0.001
Not Conserved
PCAT19
hsa-miR-20a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595063
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
43-69
0.015
1
6mer
146-171
0.013
1
LINC01140
hsa-miR-20a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000490006
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
967-990
0.017
7
6mer
794-806
0.006
4
6mer
845-871
0.005
7
RP3-402G11.25
hsa-miR-20a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000607943
Biotype: antisense
Gene id: ENSG00000273188
Gene Name: RP3-402G11.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-324
0.022
1
6mer
128-148
0.006
0
RP11-672L10.1
hsa-miR-20a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564872
Biotype: lincRNA
Gene id: ENSG00000259837
Gene Name: RP11-672L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-61
0.028
1
LINC00907
hsa-miR-20a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_046455.1
Biotype: lincRNA
Gene id: NR_046455.1 (gene)
Gene Name: LINC00907
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3162-3183
0.016
1
7mer
549-572
0.010
1
6mer
1600-1618
0.002
1
RP11-634B7.4
hsa-miR-20a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000582218
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-479
0.028
0
CASC22
hsa-miR-20a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569713
Biotype: lincRNA
Gene id: ENSG00000260887
Gene Name: CASC22
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
371-376
0.018
3
7mer
230-254
0.010
1
RP11-463J10.2
hsa-miR-20a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556834
Biotype: antisense
Gene id: ENSG00000258928
Gene Name: RP11-463J10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-354
0.028
0
LINC00907
hsa-miR-20a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585627
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3164-3185
0.016
1
7mer
551-574
0.010
1
6mer
1602-1620
0.002
1
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