LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RP11-48B3.3
hsa-miR-20a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523871
Biotype: lincRNA
Gene id: ENSG00000254162
Gene Name: RP11-48B3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-326
0.010
1
6mer
3244-3269
0.005
1
8mer
1150-1170
0.005
1
6mer
1774-1793
0.003
2
9mer
1714-1738
0.003
0
6mer
2156-2181
0.002
0
6mer
2111-2115
0.001
1
ERICH1-AS1
hsa-miR-20a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520816
Biotype: antisense
Gene id: ENSG00000237647
Gene Name: ERICH1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
653-678
0.026
Not Conserved
6mer
894-914
0.002
Not Conserved
RP11-379K17.4
hsa-miR-20a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483289
Biotype: antisense
Gene id: ENSG00000239219
Gene Name: RP11-379K17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2704-2730
0.011
1
8mer
4420-4438
0.008
1
6mer
5808-5829
0.005
3
6mer
712-726
0.003
1
6mer
4903-4923
0.002
0
ZNF561-AS1
hsa-miR-20a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588765
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-132
0.028
1
RP13-650J16.1
hsa-miR-20a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582558
Biotype: antisense
Gene id: ENSG00000264569
Gene Name: RP13-650J16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-133
0.028
1
RP11-796E2.4
hsa-miR-20a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499685
Biotype: antisense
Gene id: ENSG00000245904
Gene Name: RP11-796E2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
339-363
0.011
1
7mer
4408-4434
0.005
0
6mer
4760-4783
0.004
3
7mer
3145-3163
0.003
1
6mer
883-909
0.003
1
6mer
2855-2870
0.002
1
XLOC_007438
hsa-miR-20a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015577
Biotype: transcript isomorph
Gene id: XLOC_007438
Gene Name: XLOC_007438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-164
0.012
2
6mer
6456-6482
0.006
2
6mer
6350-6374
0.005
1
6mer
6224-6249
0.004
1
6mer
4173-4193
0.002
0
RP11-861E21.2
hsa-miR-20a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589795
Biotype: antisense
Gene id: ENSG00000267199
Gene Name: RP11-861E21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1224-1246
0.021
0
6mer
4762-4779
0.005
3
6mer
4215-4241
0.002
0
LAMTOR5-AS1
hsa-miR-20a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000598158
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-189
0.017
1
7mer
93-115
0.011
1
RP5-837I24.4
hsa-miR-20a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430748
Biotype: antisense
Gene id: ENSG00000236676
Gene Name: RP5-837I24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-60
0.028
4
RP11-537P22.2
hsa-miR-20a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554595
Biotype: sense_intronic
Gene id: ENSG00000258827
Gene Name: RP11-537P22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-19
0.028
1
PWARSN
hsa-miR-20a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022011.1
Biotype: sense
Gene id: NR_022011.1 (gene)
Gene Name: PWARSN
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-177
0.016
2
8mer
1537-1556
0.009
0
7mer
1136-1156
0.003
0
LINC00683
hsa-miR-20a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579781
Biotype: lincRNA
Gene id: ENSG00000266256
Gene Name: LINC00683
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3401-3425
0.009
0
8mer
2601-2623
0.008
0
6mer
3345-3367
0.006
2
6mer
2931-2948
0.004
0
6mer
2179-2191
0.002
1
AC079779.7
hsa-miR-20a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437798
Biotype: antisense
Gene id: ENSG00000227061
Gene Name: AC079779.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1069-1092
0.015
0
7mer
4477-4486
0.013
0
FOXN3-AS2
hsa-miR-20a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554071
Biotype: antisense
Gene id: ENSG00000259073
Gene Name: FOXN3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-78
0.028
2
RP11-266K4.13
hsa-miR-20a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1008-1031
0.021
0
6mer
37-60
0.007
0
RP11-806H10.4
hsa-miR-20a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592569
Biotype: lincRNA
Gene id: ENSG00000266970
Gene Name: RP11-806H10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-579
0.028
1
PRICKLE2-AS1
hsa-miR-20a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482609
Biotype: antisense
Gene id: ENSG00000241111
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
354-365
0.009
3
8mer
4385-4410
0.008
2
6mer
949-972
0.003
5
6mer
1663-1674
0.002
7
6mer
1506-1526
0.002
4
6mer
3601-3625
0.001
1
6mer
2359-2379
0.001
0
6mer
3689-3706
0.001
0
ITGA9-AS1
hsa-miR-20a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000450990
Biotype: antisense
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-48
0.023
1
6mer
137-152
0.005
1
XLOC_002585
hsa-miR-20a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6000-6016
0.007
4
7mer
4288-4309
0.007
1
8mer
718-738
0.006
1
6mer
5724-5745
0.005
3
6mer
5772-5786
0.003
1
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