LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RP11-764K9.1
hsa-miR-20a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1098-1116
0.029
0
XLOC_007324
hsa-miR-20a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015947
Biotype: transcript isomorph
Gene id: XLOC_007324
Gene Name: XLOC_007324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1682-1696
0.029
0
RP3-405J10.3
hsa-miR-20a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552061
Biotype: sense_intronic
Gene id: ENSG00000257298
Gene Name: RP3-405J10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3453-3473
0.016
4
8mer
4391-4415
0.008
0
6mer
2500-2511
0.002
1
6mer
2780-2805
0.002
2
6mer
2700-2716
0.001
3
XLOC_009900
hsa-miR-20a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020237
Biotype: transcript isomorph
Gene id: XLOC_009900
Gene Name: XLOC_009900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1378-1402
0.014
1
8mer
1094-1114
0.007
0
6mer
82-98
0.005
0
6mer
1552-1565
0.003
1
RP11-714L20.1
hsa-miR-20a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507365
Biotype: lincRNA
Gene id: ENSG00000251632
Gene Name: RP11-714L20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1974-1985
0.009
0
8mer
177-201
0.008
0
6mer
2079-2095
0.004
4
6mer
1626-1644
0.004
1
6mer
730-734
0.003
1
ZNF561-AS1
hsa-miR-20a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586614
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-130
0.028
1
TP73-AS1
hsa-miR-20a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418088
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-223
0.026
1
7mer
2258-2271
0.003
0
CTA-544A11.1
hsa-miR-20a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3448-3469
0.008
1
6mer
204-220
0.005
3
8mer
7952-7972
0.005
1
8mer
4623-4645
0.003
0
6mer
942-964
0.003
1
6mer
6899-6912
0.002
1
6mer
8300-8320
0.002
0
6mer
5515-5539
0.001
0
RP11-345P4.7
hsa-miR-20a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000596308
Biotype: antisense
Gene id: ENSG00000269737
Gene Name: RP11-345P4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1118-1138
0.017
1
8mer
108-132
0.012
1
LAMTOR5-AS1
hsa-miR-20a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608486
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
721-741
0.020
1
7mer
493-515
0.009
1
AC114776.3
hsa-miR-20a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-77
0.019
0
8mer
1060-1084
0.009
0
TP73-AS1
hsa-miR-20a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_033712.1
Biotype: antisense
Gene id: NR_033712.1 (gene)
Gene Name: TP73-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-223
0.026
1
7mer
2258-2271
0.003
0
XLOC_013577
hsa-miR-20a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028233
Biotype: transcript isomorph
Gene id: XLOC_013577
Gene Name: XLOC_013577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1359-1379
0.028
1
XLOC_004989
hsa-miR-20a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010469
Biotype: transcript isomorph
Gene id: XLOC_004989
Gene Name: XLOC_004989
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
336-355
0.028
Not Conserved
RP11-4O3.1
hsa-miR-20a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507808
Biotype: lincRNA
Gene id: ENSG00000250333
Gene Name: RP11-4O3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
28-49
0.028
1
FLJ37505
hsa-miR-20a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614177
Biotype: lincRNA
Gene id: ENSG00000256597
Gene Name: FLJ37505
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1085-1106
0.025
Not Conserved
6mer
598-603
0.004
0
BLOC1S5-TXNDC5
hsa-miR-20a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037616.1
Biotype: sense
Gene id: NR_037616.1 (gene)
Gene Name: BLOC1S5-TXNDC5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2567-2593
0.018
8
6mer
61-75
0.005
1
6mer
625-647
0.003
1
6mer
1241-1256
0.002
1
6mer
1897-1922
0.001
1
RP11-138P22.1
hsa-miR-20a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581901
Biotype: antisense
Gene id: ENSG00000266527
Gene Name: RP11-138P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1470-1493
0.011
0
8mer
2005-2025
0.010
1
6mer
186-209
0.007
5
XLOC_010943
hsa-miR-20a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022641
Biotype: transcript isomorph
Gene id: XLOC_010943
Gene Name: XLOC_010943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
368-391
0.028
1
LINC00102
hsa-miR-20a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000445785
Biotype: lincRNA
Gene id: ENSG00000230542
Gene Name: LINC00102
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
542-566
0.016
0
7mer
643-648
0.013
1
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