LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
RP1-228P16.8
hsa-miR-20a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000616571
Biotype: lincRNA
Gene id: ENSG00000276814
Gene Name: RP1-228P16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-232
0.029
0
STARD13-AS
hsa-miR-20a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608315
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.029
4
XLOC_006253
hsa-miR-20a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013599
Biotype: transcript isomorph
Gene id: XLOC_006253
Gene Name: XLOC_006253
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5247-5267
0.015
1
8mer
3857-3877
0.006
0
6mer
5013-5034
0.004
1
6mer
415-436
0.002
0
6mer
3177-3194
0.001
0
STARD13-AS
hsa-miR-20a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609615
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-81
0.029
4
H19
hsa-miR-20a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000412788
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
655-680
0.025
1
6mer
1992-2015
0.003
1
XLOC_006857
hsa-miR-20a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014542
Biotype: transcript isomorph
Gene id: XLOC_006857
Gene Name: XLOC_006857
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1558-1583
0.029
Not Conserved
XLOC_009690
hsa-miR-20a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020359
Biotype: transcript isomorph
Gene id: XLOC_009690
Gene Name: XLOC_009690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-601
0.016
1
7mer
74-98
0.012
1
ZNF561-AS1
hsa-miR-20a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585797
Biotype: antisense
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-130
0.029
1
STARD13-AS
hsa-miR-20a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608539
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.029
4
XLOC_006722
hsa-miR-20a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014625
Biotype: transcript isomorph
Gene id: XLOC_006722
Gene Name: XLOC_006722
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-449
0.029
Not Conserved
AC010745.2
hsa-miR-20a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420404
Biotype: lincRNA
Gene id: ENSG00000228876
Gene Name: AC010745.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
688-713
0.029
1
LINC00598
hsa-miR-20a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_024507.1
Biotype: lincRNA
Gene id: NR_024507.1 (gene)
Gene Name: LINC00598
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1920-1945
0.019
0
7mer
1086-1100
0.008
1
6mer
2926-2944
0.002
1
6mer
1911-1931
0.001
2
RP11-680F20.10
hsa-miR-20a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564354
Biotype: lincRNA
Gene id: ENSG00000260209
Gene Name: RP11-680F20.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
11-33
0.016
0
6mer
115-131
0.013
0
RP11-797A18.6
hsa-miR-20a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602975
Biotype: sense_intronic
Gene id: ENSG00000269951
Gene Name: RP11-797A18.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-420
0.024
4
6mer
114-136
0.005
1
XLOC_009990
hsa-miR-20a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020685
Biotype: transcript isomorph
Gene id: XLOC_009990
Gene Name: XLOC_009990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
992-1012
0.015
1
7mer
643-664
0.010
0
6mer
576-591
0.004
0
LINC01410
hsa-miR-20a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1764-1782
0.029
0
RP11-116O18.1
hsa-miR-20a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590535
Biotype: sense_intronic
Gene id: ENSG00000266968
Gene Name: RP11-116O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
993-1010
0.024
1
6mer
833-852
0.003
1
6mer
917-935
0.002
0
RP13-650J16.1
hsa-miR-20a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584705
Biotype: antisense
Gene id: ENSG00000264569
Gene Name: RP13-650J16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-259
0.018
1
8mer
426-450
0.010
0
XLOC_007710
hsa-miR-20a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1098-1116
0.029
0
LINC00598
hsa-miR-20a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_024506.1
Biotype: lincRNA
Gene id: NR_024506.1 (gene)
Gene Name: LINC00598
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1920-1945
0.018
0
7mer
1086-1100
0.008
1
6mer
2926-2944
0.002
1
6mer
1911-1931
0.001
2
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