LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
HAND2-AS1
hsa-miR-20a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515350
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
778-804
0.040
7
8mer
2428-2448
0.021
8
7mer
506-526
0.018
5
6mer
336-356
0.003
1
6mer
585-604
0.003
4
HOTAIRM1
hsa-miR-20a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000428939
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
724-748
0.078
6
6mer
736-760
0.008
7
RP13-991F5.2
hsa-miR-20a-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582249
Biotype: antisense
Gene id: ENSG00000266445
Gene Name: RP13-991F5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-127
0.061
0
6mer
395-421
0.012
0
6mer
688-712
0.012
0
RP11-355O1.11
hsa-miR-20a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000561961
Biotype: sense_overlapping
Gene id: ENSG00000261094
Gene Name: RP11-355O1.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1848-1862
0.068
1
8mer
109-129
0.008
0
6mer
1895-1919
0.006
3
6mer
1505-1525
0.003
1
HAND2-AS1
hsa-miR-20a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503198
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2390-2416
0.054
7
7mer
2118-2138
0.022
5
6mer
2197-2216
0.005
4
6mer
242-262
0.004
1
MIR6818
hsa-miR-20a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27872-27895
0.006
0
7mer
13042-13062
0.005
0
8mer
5130-5155
0.005
1
7mer
19534-19559
0.005
0
7mer
15070-15087
0.004
0
8mer
32675-32694
0.004
1
7mer
18421-18447
0.004
0
7mer
16604-16620
0.004
0
7mer
6055-6081
0.003
0
6mer
9551-9570
0.003
8
8mer
18048-18067
0.003
1
8mer
11895-11915
0.003
1
8mer
4948-4972
0.003
1
8mer
10538-10558
0.003
0
6mer
2529-2533
0.003
4
6mer
33713-33733
0.003
5
7mer
24277-24293
0.002
1
6mer
24396-24417
0.002
3
6mer
27261-27282
0.002
3
6mer
23994-24013
0.002
5
6mer
15991-16011
0.002
1
6mer
5772-5788
0.002
3
6mer
5893-5918
0.002
3
6mer
13706-13716
0.001
0
6mer
47494-47518
0.001
2
6mer
32428-32440
0.001
0
6mer
20094-20114
0.001
2
6mer
46477-46494
0.001
0
6mer
34118-34138
0.001
0
6mer
4492-4516
0.001
1
6mer
13653-13679
0.001
Not Conserved
XLOC_008295
hsa-miR-20a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2957-2977
0.023
0
7mer
1121-1142
0.021
0
7mer
3174-3191
0.020
0
8mer
4029-4052
0.014
0
6mer
3984-3996
0.007
0
TTTY15
hsa-miR-20a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2957-2977
0.023
0
7mer
1121-1142
0.021
0
7mer
3174-3191
0.020
0
8mer
4029-4052
0.014
0
6mer
3984-3996
0.007
0
HOTAIRM1
hsa-miR-20a-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434063
Biotype: antisense
Gene id: ENSG00000233429
Gene Name: HOTAIRM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-515
0.076
6
6mer
503-527
0.008
7
PCAT19
hsa-miR-20a-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595837
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-50
0.059
1
6mer
1085-1110
0.013
1
6mer
982-1008
0.012
1
ZNF561-AS1
hsa-miR-20a-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2325-2347
0.050
0
8mer
893-913
0.033
0
XLOC_010279
hsa-miR-20a-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020261
Biotype: transcript isomorph
Gene id: XLOC_010279
Gene Name: XLOC_010279
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1215-1239
0.028
0
8mer
1521-1545
0.027
0
6mer
113-126
0.016
0
6mer
545-571
0.011
0
RP11-278I4.2
hsa-miR-20a-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
933-953
0.065
7
6mer
1209-1232
0.006
3
6mer
1119-1138
0.004
3
6mer
859-880
0.003
1
6mer
752-773
0.003
3
CTC-529L17.2
hsa-miR-20a-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503489
Biotype: lincRNA
Gene id: ENSG00000249984
Gene Name: CTC-529L17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-181
0.082
1
LINC01135
hsa-miR-20a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419531
Biotype: lincRNA
Gene id: ENSG00000234807
Gene Name: LINC01135
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
872-897
0.081
4
HAND2-AS1
hsa-miR-20a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616485
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2387-2413
0.050
7
7mer
2115-2135
0.022
5
6mer
2194-2213
0.005
4
6mer
239-259
0.004
1
HAND2-AS1
hsa-miR-20a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510339
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
913-939
0.036
7
8mer
2563-2583
0.021
8
7mer
641-661
0.017
5
6mer
336-356
0.003
1
6mer
720-739
0.003
4
LINC00116
hsa-miR-20a-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027063.1
Biotype: sense
Gene id: NR_027063.1 (gene)
Gene Name: LINC00116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-57
0.080
8
XLOC_006964
hsa-miR-20a-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014550
Biotype: transcript isomorph
Gene id: XLOC_006964
Gene Name: XLOC_006964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-270
0.079
1
RP11-17M16.2
hsa-miR-20a-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581996
Biotype: antisense
Gene id: ENSG00000265778
Gene Name: RP11-17M16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
870-893
0.052
5
7mer
1014-1033
0.028
5
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