LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-20a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004061
hsa-miR-20a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008568
Biotype: transcript isomorph
Gene id: XLOC_004061
Gene Name: XLOC_004061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-557
0.017
6
6mer
390-412
0.004
2
6mer
328-348
0.004
0
6mer
383-408
0.004
6
AC011747.4
hsa-miR-20a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454224
Biotype: lincRNA
Gene id: ENSG00000236008
Gene Name: AC011747.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-92
0.012
1
6mer
90-107
0.004
1
6mer
487-510
0.004
1
6mer
698-716
0.003
1
8mer
3641-3665
0.003
1
6mer
690-716
0.002
0
6mer
1869-1890
0.001
Not Conserved
PRKG1-AS1
hsa-miR-20a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038277.1
Biotype: antisense
Gene id: NR_038277.1 (gene)
Gene Name: PRKG1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2036-2050
0.019
1
6mer
2161-2184
0.007
5
6mer
2073-2094
0.003
0
RP11-1C1.4
hsa-miR-20a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515243
Biotype: lincRNA
Gene id: ENSG00000249396
Gene Name: RP11-1C1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1915-1936
0.023
0
6mer
1618-1642
0.004
1
6mer
726-741
0.003
0
TP73-AS1
hsa-miR-20a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_033709.1
Biotype: antisense
Gene id: NR_033709.1 (gene)
Gene Name: TP73-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-223
0.026
1
7mer
2917-2930
0.002
0
7mer
4563-4581
0.002
Not Conserved
LINC01482
hsa-miR-20a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587999
Biotype: lincRNA
Gene id: ENSG00000267659
Gene Name: LINC01482
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
442-455
0.014
2
6mer
515-532
0.009
1
6mer
521-538
0.007
0
RP4-665J23.1
hsa-miR-20a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455680
Biotype: retained_intron
Gene id: ENSG00000233593
Gene Name: RP4-665J23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-178
0.027
2
6mer
981-1003
0.003
1
RP11-1140I5.1
hsa-miR-20a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554475
Biotype: antisense
Gene id: ENSG00000259055
Gene Name: RP11-1140I5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1082-1105
0.020
1
6mer
854-870
0.005
1
6mer
374-396
0.004
0
FLJ46284
hsa-miR-20a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000623616
Biotype: TEC
Gene id: ENSG00000248858
Gene Name: FLJ46284
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4141-4153
0.009
4
6mer
4093-4115
0.008
5
6mer
2-16
0.005
1
6mer
3413-3427
0.003
1
6mer
1720-1737
0.002
1
6mer
1905-1921
0.002
0
6mer
2192-2210
0.001
0
RP4-665J23.1
hsa-miR-20a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606660
Biotype: retained_intron
Gene id: ENSG00000233593
Gene Name: RP4-665J23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-178
0.027
2
6mer
981-1003
0.003
1
MEG3
hsa-miR-20a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000452120
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
965-990
0.023
4
6mer
3629-3645
0.005
4
6mer
2270-2287
0.002
1
AC079163.1
hsa-miR-20a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418416
Biotype: lincRNA
Gene id: ENSG00000226218
Gene Name: AC079163.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-258
0.024
0
6mer
271-289
0.005
0
RP11-728E14.3
hsa-miR-20a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577309
Biotype: lincRNA
Gene id: ENSG00000265043
Gene Name: RP11-728E14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2463-2478
0.024
1
6mer
452-479
0.005
0
XLOC_006843
hsa-miR-20a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014758
Biotype: transcript isomorph
Gene id: XLOC_006843
Gene Name: XLOC_006843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-383
0.029
2
STARD13-AS
hsa-miR-20a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609137
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-72
0.029
4
LAMTOR5-AS1
hsa-miR-20a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608719
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-600
0.020
1
7mer
352-374
0.009
1
LAMTOR5-AS1
hsa-miR-20a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000585433
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-125
0.019
1
7mer
29-51
0.010
1
AP000688.29
hsa-miR-20a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422473
Biotype: lincRNA
Gene id: ENSG00000233393
Gene Name: AP000688.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
554-581
0.029
0
RP11-475A13.2
hsa-miR-20a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2214-2237
0.018
0
6mer
511-523
0.011
1
STARD13-AS
hsa-miR-20a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607944
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-20a-5p
Sequence: uaaagugcuuauagugcagguag
MirBase ID: MIMAT0000075
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.029
4
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